Detalle de: PEATmoss: A Gene Expression Atlas for Bryophytes
| Title | PEATmoss: A Gene Expression Atlas for Bryophytes |
| Abstract |
PEATmoss is an interactive gene expression atlas for bryophytes, which originally unified Physcomitrium patens RNA-seq and microarray expression data from multiple gene annotation versions. This atlas includes more than 100 experiments of P. patens, is expanding to host Anthoceros agrestis and Marchantia polymorpha, and aims to host data from more species in the future. PEATmoss has multiple visualization methods and tools for data downloading and is connected to the Physcomitrium patens Gene Model Lookup DB (PpGML DB), which links P. patens genes to annotations and resources from several databases and contains tools for gene version lookup and sequence and annotation extraction. Among the new features available in PEATmoss are dataset privacy control, multispecies menu, interactive color scale, co-expression network visualization, and replicate data downloading. |
| Apa Reference | Fernandez-Pozo, N. (2023). PEATmoss: A Gene Expression Atlas for Bryophytes. Plant Genomic and Cytogenetic Databases, 91–107. 10.1007/978-1-0716-3389-2_8 |
| Doi | 10.1007/978-1-0716-3389-2_8 |
| Publication Date | 2023 |
| Publication Type | Book / chapter |
| Researcher | Noé Fernández Pozo |
| Ontology | Transcriptomics, RNA Sequencing (RNA-seq), Biological Databases, Expression Profiling, Gene regulatory networks, Genomic Annotation, Network Biology |
| Research Groups | Breeding and developmental biology of subtropical fruit |
| Tools |