This site is under development. For the current active site, go to bcbhub.csic.es.

Orcid Publication

Detalle de: PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens

Title PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
Abstract

Summary Physcomitrella patens is a bryophyte model plant that is often used to study plant evolution and development. Its resources are of great importance for comparative genomics and evo‐devo approaches. However, expression data from Physcomitrella patens were so far generated using different gene annotation versions and three different platforms: CombiMatrix and NimbleGen expression microarrays and RNA sequencing. The currently available P. patens expression data are distributed across three tools with different visualization methods to access the data. Here, we introduce an interactive expression atlas, Physcomitrella Expression Atlas Tool (PEATmoss), that unifies publicly available expression data for P. patens and provides multiple visualization methods to query the data in a single web‐based tool. Moreover, PEATmoss includes 35 expression experiments not previously available in any other expression atlas. To facilitate gene expression queries across different gene annotation versions, and to access P. patens annotations and related resources, a lookup database and web tool linked to PEATmoss was implemented. PEATmoss can be accessed at https://peatmoss.online.uni-marburg.de

Apa Reference Fernandez‐Pozo, N., Haas, F. B., Meyberg, R., Ullrich, K. K., Hiss, M., Perroud, P., Hanke, S., Kratz, V., Powell, A. F., Vesty, E. F., Daum, C. G., Zane, M., Lipzen, A., Sreedasyam, A., Grimwood, J., Coates, J. C., Barry, K., Schmutz, J., Mueller, L. A., & Rensing, S. A. (2020). PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens. The Plant Journal, 102(1), 165–177. Portico. 10.1111/tpj.14607
Doi 10.1111/tpj.14607
Publication Date 11 Jan 2020
Publication Type Article
Researcher Noé Fernández Pozo
Ontology Resources, Genomics, Development
Research Groups Breeding and developmental biology of subtropical fruit
Tools

Suggest changes

Publications are synced automatically from ORCID, so they can't be edited here directly. Spotted something wrong? Let us know below and we'll take care of it.

← Return to Home