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Detalle de: Three-Dimensional Epigenome Roadmap of Human B-cell Differentiation Uncovers Mechanisms of Humoral Immunity and Oncogenesis

Title Three-Dimensional Epigenome Roadmap of Human B-cell Differentiation Uncovers Mechanisms of Humoral Immunity and Oncogenesis
Abstract

Human B-cell differentiation underlies humoral immunity, and its disruption leads to cancer, autoimmunity, and immunodeficiencies. However, the enhancer-based regulatory mechanisms governing this process remain poorly understood. To address this gap, we generated the first three-dimensional epigenomic roadmap of human B-cell differentiation in vivo . By profiling nine differentiation stages, we linked nearly half a million enhancers to their target genes through chromatin interactions, defined their activity states, and predicted bound transcription factors. We show that the acquisition of B-cell identity, distinct from common cellular processes, relies on large enhancer networks acting additively and synergistically to finely tune transcription. We further identify a 3D epigenetic priming mechanism underlying immune memory, whereby memory B cells retain primed DNA loops that enable faster responses to antigen re-exposure. Extending this roadmap to disease, we demonstrate that B-cell malignancies preserve enhancer signatures of their cell of origin while silencing distal tumor suppressor control. Finally, we uncover a previously unappreciated oncogenic mechanism in which intragenic deletions disrupt distal gene regulation via enhancer loss. Together, this resource provides a framework for understanding the genetic and epigenetic basis of humoral immunity and immune-related diseases.

Apa Reference de Haro-Blázquez, R., Tomás-Daza, L., Fanlo-Escudero, L., López-Martí, P., Byrne-Álvarez, N., Rovirosa, L., Valero-Martínez, B., Ochoteco, J., Rigau, M., Medvedeva, G., Álvarez-González, L., Urmeneta, B., Planas-Riverola, A., Carbonell, J., Robert-Finestra, T., Alqahtani, A., Brittain, N., Falcon-Bermejo, J., Kulis, M., Martin-Subero, J.I., Guerrero-Gilabert, M.D., Amilibia, E., Costa, A., Pérez, S., Rusell, L.J., Rico, D., Valencia, A. & Javierre, B.M. (2025). Three-Dimensional Epigenome Roadmap of Human B-cell Differentiation Uncovers Mechanisms of Humoral Immunity and Oncogenesis. 10.64898/2025.12.22.695871
Doi 10.64898/2025.12.22.695871
Publication Date 24 Dec 2025
Publication Type Preprint
Researcher Daniel Rico
Ontology Epigenomics, Regulatory biology
Research Groups
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