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Detalle de: How many (distinguishable) classes can we identify in single-particle analysis?

Title How many (distinguishable) classes can we identify in single-particle analysis?
Abstract

Heterogeneity in cryoEM is essential for capturing the structural variability of macromolecules, reflecting their functional states and biological significance. However, estimating heterogeneity remains challenging due to particle misclassification and algorithmic biases, which can lead to reconstructions that blend distinct conformations or fail to resolve subtle differences. Furthermore, the low signal-to-noise ratio inherent in cryo-EM data makes it nearly impossible to detect minute structural changes, as noise often obscures subtle variations in macromolecular projections. In this paper, we investigate the use of p -values associated with the null hypothesis that the observed classification differs from a random partition of the input data set, thereby providing a statistical framework for determining the number of distinguishable classes present in a given data set.

Apa Reference Lauzirika, O., Pernica, M., Herreros, D., Ramírez-Aportela, E., Krieger, J., Gragera, M., Iceta, M., Conesa, P., Fonseca, Y., Jiménez, J., Filipovic, J., Carazo, J.M. & Sorzano, C.O.S. (2025). How many (distinguishable) classes can we identify in single-particle analysis?. Acta Crystallographica Section D Structural Biology, 81(10), 535-544. 10.1107/s2059798325007831
Doi 10.1107/s2059798325007831
Publication Date 9 Sep 2025
Publication Type Article
Researcher Jose María Salvador Carazo Garcia
Ontology Structural bioinformatics, Experimental structure determination, Statistical Methods for Biology, Frequentist analysis, Cryo-electron microscopy
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