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Detalle de: 3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations

Title 3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations
Abstract

Motivation Many diseases are associated to single nucleotide polymorphisms that affect critical regions of proteins as binding sites or post translational modifications. Therefore, analysing genomic variants with structural and molecular biology data is a powerful framework in order to elucidate the potential causes of such diseases. Results A new version of our web framework 3DBIONOTES is presented. This version offers new tools to analyse and visualize protein annotations and genomic variants, including a contingency analysis of variants and amino acid features by means of a Fisher exact test, the integration of a gene annotation viewer to highlight protein features on gene sequences and a protein–protein interaction viewer to display protein annotations at network level. Availability and implementation The web server is available at https://3dbionotes.cnb.csic.es Supplementary information Supplementary data are available at Bioinformatics online. Contact Spanish National Institute for Bioinformatics (INB ELIXIR-ES) and Biocomputing Unit, National Centre of Biotechnology (CSIC)/Instruct Image Processing Centre, C/ Darwin nº 3, Campus of Cantoblanco, 28049 Madrid, Spain.

Apa Reference Segura, J., Sanchez-Garcia, R., Sorzano, C.O.S. & Carazo, J.M. (2019). 3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations. Bioinformatics, 35(18), 3512-3513. 10.1093/bioinformatics/btz118
Doi 10.1093/bioinformatics/btz118
Publication Date 15 Feb 2019
Publication Type Software
Researcher Jose María Salvador Carazo Garcia
Ontology Bioinformatics Software and Tools, Genomics, Bioinformatics Infrastructure, Genomic Annotation, Web-service, Population genomics, Image analysis, Molecular Interactions/Docking, Protein-Protein Interactions
Research Groups
Tools 3DBionotes

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