Detalle de: Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy
| Title | Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy |
| Abstract |
In the past few years, 3D electron microscopy (3DEM) has undergone a revolution in instrumentation and methodology. One of the central players in this wide-reaching change is the continuous development of image processing software. Here we present Scipion, a software framework for integrating several 3DEM software packages through a workflow-based approach. Scipion allows the execution of reusable, standardized, traceable and reproducible image-processing protocols. These protocols incorporate tools from different programs while providing full interoperability among them. Scipion is an open-source project that can be downloaded from http://scipion.cnb.csic.es. |
| Apa Reference | de la Rosa-Trevín, J., Quintana, A., del Cano, L., Zaldívar, A., Foche, I., Gutiérrez, J., Gómez-Blanco, J., Burguet-Castell, J., Cuenca-Alba, J., Abrishami, V., Vargas, J., Otón, J., Sharov, G., Vilas, J., Navas, J., Conesa, P., Kazemi, M., Marabini, R., Sorzano, C. & Carazo, J. (2016). Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy. Journal of Structural Biology, 195(1), 93-99. 10.1016/j.jsb.2016.04.010 |
| Doi | 10.1016/j.jsb.2016.04.010 |
| Publication Date | Jul 2016 |
| Publication Type | Software |
| Researcher | Jose María Salvador Carazo Garcia |
| Ontology | Bioinformatics Software and Tools, Experimental structure determination, FAIRfication, Image analysis |
| Research Groups | |
| Tools | Scipion |