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Detalle de: Semiautomatic, High-Throughput, High-Resolution Protocol for Three-Dimensional Reconstruction of Single Particles in Electron Microscopy

Title Semiautomatic, High-Throughput, High-Resolution Protocol for Three-Dimensional Reconstruction of Single Particles in Electron Microscopy
Abstract

In this chapter we describe the steps needed for reconstructing the three-dimensional structure of a macromolecular complex starting from its projections collected in electron micrographs. The concepts are shown through the use of Xmipp 3.0, a software suite specifically designed for the image processing of biological structures imaged with electron or X-ray microscopy. We illustrate the image processing workflow by applying it to the images of Bovine Papilloma virus published in Wolf et al. (Proc Natl Acad Sci USA 107:6298-6303, 2010). We show that in the case of high-quality, homogeneous datasets with a priori knowledge about the initial volume, we can have a high-resolution 3D reconstruction in less than 1 day using a computer cluster with only 32 processors.

Apa Reference Sorzano, C.O., de la Rosa Trevín, J.M., Otón, J., Vega, J.J., Cuenca, J., Zaldívar-Peraza, A., Gómez-Blanco, J., Vargas, J., Quintana, A., Marabini, R. & Carazo, J.M. (2012). Semiautomatic, High-Throughput, High-Resolution Protocol for Three-Dimensional Reconstruction of Single Particles in Electron Microscopy. Methods in Molecular Biology, 171-193. 10.1007/978-1-62703-137-0_11
Doi 10.1007/978-1-62703-137-0_11
Publication Date 18 Sep 2012
Publication Type Book / chapter
Researcher Jose María Salvador Carazo Garcia
Ontology Bioinformatics Software and Tools, Experimental structure determination, Image analysis
Research Groups
Tools

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