Detalle de: Macromolecular modeling and design in Rosetta: recent methods and frameworks
| Title | Macromolecular modeling and design in Rosetta: recent methods and frameworks |
| Abstract |
The Rosetta software for macromolecular modeling, docking and design is extensively used in laboratories worldwide. During two decades of development by a community of laboratories at more than 60 institutions, Rosetta has been continuously refactored and extended. Its advantages are its performance and interoperability between broad modeling capabilities. Here we review tools developed in the last 5 years, including over 80 methods. We discuss improvements to the score function, user interfaces and usability. Rosetta is available at http://www.rosettacommons.org. |
| Apa Reference | Leman, J.K., Weitzner, B.D., Lewis, S.M., Adolf-Bryfogle, J., Alam, N., Alford, R.F., Aprahamian, M., Baker, D., Barlow, K.A., Barth, P., Basanta, B., Bender, B.J., Blacklock, K., Bonet, J., Boyken, S.E., Bradley, P., Bystroff, C., Conway, P., Cooper, S., Correia, B.E., Coventry, B., Das, R., De Jong, R.M., DiMaio, F., Dsilva, L., Dunbrack, R., Ford, A.S., Frenz, B., Fu, D.Y., Geniesse, C., Goldschmidt, L., Gowthaman, R., Gray, J.J., Gront, D., Guffy, S., Horowitz, S., Huang, P., Huber, T., Jacobs, T.M., Jeliazkov, J.R., Johnson, D.K., Kappel, K., Karanicolas, J., Khakzad, H., Khar, K.R., Khare, S.D., Khatib, F., Khramushin, A., King, I.C., Kleffner, R., Koepnick, B., Kortemme, T., Kuenze, G., Kuhlman, B., Kuroda, D., Labonte, J.W., Lai, J.K., Lapidoth, G., Leaver-Fay, A., Lindert, S., Linsky, T., London, N., Lubin, J.H., Lyskov, S., Maguire, J., Malmström, L., Marcos, E., Marcu, O., Marze, N.A., Meiler, J., Moretti, R., Mulligan, V.K., Nerli, S., Norn, C., Ó’Conchúir, S., Ollikainen, N., Ovchinnikov, S., Pacella, M.S., Pan, X., Park, H., Pavlovicz, R.E., Pethe, M., Pierce, B.G., Pilla, K.B., Raveh, B., Renfrew, P.D., Burman, S.S.R., Rubenstein, A., Sauer, M.F., Scheck, A., Schief, W., Schueler-Furman, O., Sedan, Y., Sevy, A.M., Sgourakis, N.G., Shi, L., Siegel, J.B., Silva, D., Smith, S., Song, Y., Stein, A., Szegedy, M., Teets, F.D., Thyme, S.B., Wang, R.Y., Watkins, A., Zimmerman, L. & Bonneau, R. (2020). Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods, 17(7), 665-680. 10.1038/s41592-020-0848-2 |
| Doi | 10.1038/s41592-020-0848-2 |
| Publication Date | 1 Jun 2020 |
| Publication Type | Article |
| Researcher | Enrique Marcos Benteo |
| Ontology | Bioinformatics Software and Tools, FAIRfication, Molecular Interactions/Docking |
| Research Groups | |
| Tools |