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Detalle de: The Quest for Orthologs benchmark service and consensus calls in 2020

Title The Quest for Orthologs benchmark service and consensus calls in 2020
Abstract

The identification of orthologs—genes in different species which descended from the same gene in their last common ancestor—is a prerequisite for many analyses in comparative genomics and molecular evolution. Numerous algorithms and resources have been conceived to address this problem, but benchmarking and interpreting them is fraught with difficulties (need to compare them on a common input dataset, absence of ground truth, computational cost of calling orthologs). To address this, the Quest for Orthologs consortium maintains a reference set of proteomes and provides a web server for continuous orthology benchmarking (http://orthology.benchmarkservice.org). Furthermore, consensus ortholog calls derived from public benchmark submissions are provided on the Alliance of Genome Resources website, the joint portal of NIH-funded model organism databases.

Apa Reference Altenhoff, A.M., Garrayo-Ventas, J., Cosentino, S., Emms, D., Glover, N.M., Hernández-Plaza, A., Nevers, Y., Sundesha, V., Szklarczyk, D., Fernández, J.M., Codó, L., for Orthologs Consortium, t.Q., Gelpi, J.L., Huerta-Cepas, J., Iwasaki, W., Kelly, S., Lecompte, O., Muffato, M., Martin, M.J., Capella-Gutierrez, S., Thomas, P.D., Sonnhammer, E. & Dessimoz, C. (2020). The Quest for Orthologs benchmark service and consensus calls in 2020. Nucleic Acids Research, 48(W1), W538-W545. 10.1093/nar/gkaa308
Doi 10.1093/nar/gkaa308
Publication Date 6 May 2020
Publication Type Article
Researcher Jaime Huerta Cepas
Ontology Resources, Bioinformatics Software and Tools, Model organisms, Benchmarking, Genomics, Biological Databases, Web-service, Molecular evolution, Proteomics, Comparative Genomics
Research Groups
Tools

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