Detalle de: MOCAT2: a metagenomic assembly, annotation and profiling framework
| Title | MOCAT2: a metagenomic assembly, annotation and profiling framework |
| Abstract |
Summary: MOCAT2 is a software pipeline for metagenomic sequence assembly and gene prediction with novel features for taxonomic and functional abundance profiling. The automated generation and efficient annotation of non-redundant reference catalogs by propagating pre-computed assignments from 18 databases covering various functional categories allows for fast and comprehensive functional characterization of metagenomes. Availability and Implementation: MOCAT2 is implemented in Perl 5 and Python 2.7, designed for 64-bit UNIX systems and offers support for high-performance computer usage via LSF, PBS or SGE queuing systems; source code is freely available under the GPL3 license at http://mocat.embl.de. Contact: bork@embl.de Supplementary information: Supplementary data are available at Bioinformatics online. |
| Apa Reference | Kultima, J.R., Coelho, L.P., Forslund, K., Huerta-Cepas, J., Li, S.S., Driessen, M., Voigt, A.Y., Zeller, G., Sunagawa, S. & Bork, P. (2016). MOCAT2: a metagenomic assembly, annotation and profiling framework. Bioinformatics, 32(16), 2520-2523. 10.1093/bioinformatics/btw183 |
| Doi | 10.1093/bioinformatics/btw183 |
| Publication Date | 8 Apr 2016 |
| Publication Type | Article |
| Researcher | Jaime Huerta Cepas |
| Ontology | Bioinformatics Software and Tools, Biological Databases, High-performance Computing, Genomic Annotation, Metagenomics |
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| Tools |