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Detalle de: Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics

Title Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics
Abstract

Phylemon is an online platform for phylogenetic and evolutionary analyses of molecular sequence data. It has been developed as a web server that integrates a suite of different tools selected among the most popular stand-alone programs in phylogenetic and evolutionary analysis. It has been conceived as a natural response to the increasing demand of data analysis of many experimental scientists wishing to add a molecular evolution and phylogenetics insight into their research. Tools included in Phylemon cover a wide yet selected range of programs: from the most basic for multiple sequence alignment to elaborate statistical methods of phylogenetic reconstruction including methods for evolutionary rates analyses and molecular adaptation. Phylemon has several features that differentiates it from other resources: (i) It offers an integrated environment that enables the direct concatenation of evolutionary analyses, the storage of results and handles required data format conversions, (ii) Once an outfile is produced, Phylemon suggests the next possible analyses, thus guiding the user and facilitating the integration of multi-step analyses, and (iii) users can define and save complete pipelines for specific phylogenetic analysis to be automatically used on many genes in subsequent sessions or multiple genes in a single session (phylogenomics). The Phylemon web server is available at http://phylemon.bioinfo.cipf.es.

Apa Reference Tarraga, J., Medina, I., Arbiza, L., Huerta-Cepas, J., Gabaldon, T., Dopazo, J. & Dopazo, H. (2007). Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. Nucleic Acids Research, 35(Web Server), W38-W42. 10.1093/nar/gkm224
Doi 10.1093/nar/gkm224
Publication Date 8 May 2007
Publication Type Article
Researcher Jaime Huerta Cepas
Ontology Bioinformatics Software and Tools, Statistical Methods for Biology, Web-service, Molecular evolution, Sequence analysis, Sequence Alignment, Phylogenetic Analysis, Evolutionary rates, Phylogenomics
Research Groups
Tools

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