Manolo Perez
Evolutionary biology of plants: patterns, processes and mechanisms · RJB
Biography
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My research focuses primarily on the diversification of Neotropical taxa. Using climatic, spatial, computational, and genetic tools, my goal is to study demographic events and phylogenetic relationships in various organisms. I am currently studying the diversification of fish species in the order Osteoglossiformes, which are found on three different continents, using phylogenetic, biogeographic, and machine learning methods. During my Ph.D., I focused my studies on the phylogeography of species in arid environments. I have also conducted research on diversification mechanisms in other groups of plants, birds, and arthropods from the Neotropical region. I hold a Ph.D. in Evolutionary Genetics and Molecular Biology from the Federal University of São Carlos (UFSCar). I am currently a researcher at the Royal Botanical Garden of Madrid. Prior to that, I was a researcher at Imperial College London, the Muséum national d’Histoire naturelle in Paris, and the Fish Cytogenetics Laboratory at UFSCar. I was also a visiting researcher at the Sanmartín Lab and the Faircloth Lab. During my Ph.D., I was advised by Professor Evandro Marsola de Moraes. During my Ph.D., I was also a member of the Bryan Carstens Lab. |
Profile
| Institution | RJB |
| Position | Researcher |
| Home page | https://sites.google.com/site/manolofperezbr/ |
| Contact email | manolofernandez@rjb.csic.es |
| ORCID | 0000-0002-4642-7793 |
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| BCB Committee | Not a member |
| BCB Tools | |
| BCB Services |
Research
Research topics
Research lines
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Publications 31 entries
- PhyloCNN: Improving Tree Representation and Neural Network Architecture for Deep Learning from Trees in Phylodynamics and Diversification Studies Article · 22 Nov 2025
- Ten simple rules for navigating AI in science Article · 18 Jul 2025
- Multiple karyotype differences between populations of the Hoplias malabaricus (Teleostei; Characiformes), a species complex in the gray area of the speciation process Article · 22 Jul 2024
- Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations Article · 21 Jun 2023
- Revisiting phylogeny, systematics, and biogeography of a Pleistocene radiation Article · Mar 2023
View all (26 more)
- Integrating Genomic and Cytogenetic Data to Study the Evolutionary History of Arapaimas and Arowanas in the Neotropics Book / chapter · 2023
- Phylogeography for Neotropical Species Conservation: Lineages Through Time and Space Book / chapter · 2023
- The Genetic Differentiation of Pyrrhulina (Teleostei, Characiformes) Species is Likely Influenced by Both Geographical Distribution and Chromosomal Rearrangements Article · 4 May 2022
- Integrating Cytogenetics and Population Genomics: Allopatry and Neo-Sex Chromosomes May Have Shaped the Genetic Divergence in the Erythrinus erythrinus Species Complex (Teleostei, Characiformes) Article · 16 Feb 2022
- Coalescent‐based species delimitation meets deep learning: Insights from a highly fragmented cactus system Article · 31 Oct 2021
- Molecular Phylogeny of Cryptonanus (Didelphidae: Thylamyini): Evidence for a recent and complex diversification in South American open biomes Article · Sep 2021
- Multiple sex chromosomes in teleost fishes from a cytogenetic perspective: state of the art and future challenges Article · 26 Jul 2021
- Can geometric morphometrics work for species clusterization on the armored catfish Hypostomus Lacépède, 1803 (Siluriformes Loricariidae)? Article · 15 Feb 2021
- High Genetic Diversity despite Conserved Karyotype Organization in the Giant Trahiras from Genus Hoplias (Characiformes, Erythrinidae) Article · 10 Feb 2021
- Historical demography and climate driven distributional changes in a widespread Neotropical freshwater species with high economic importance Article · 9 Jun 2020
- Comparative cytogenetic survey of the giant bonytongue Arapaima fish (Osteoglossiformes: Arapaimidae), across different Amazonian and Tocantins/Araguaia River basins Article · 2020
- Interspecific Genetic Differences and Historical Demography in South American Arowanas (Osteoglossiformes, Osteoglossidae, Osteoglossum) Article · 9 Sep 2019
- Phylogeography and Historical Demography of Two Sympatric Atlantic Snappers: Lutjanus analis and L. jocu Article · 4 Sep 2019
- Deciphering the Evolutionary History of Arowana Fishes (Teleostei, Osteoglossiformes, Osteoglossidae): Insight from Comparative Cytogenomics Article · 2 Sep 2019
- Assessing population structure in the face of isolation by distance: Are we neglecting the problem? Article · 18 Jul 2018
- Weak population structure and no genetic erosion in Pilosocereus aureispinus: A microendemic and threatened cactus species from eastern Brazil Article · 9 Apr 2018
- The xeric side of the Brazilian Atlantic Forest: The forces shaping phylogeographic structure of cacti Article · 4 Oct 2017
- Extreme population subdivision or cryptic speciation in the cactus Pilosocereus jauruensis ? A taxonomic challenge posed by a naturally fragmented system Article · 17 Aug 2017
- Genetic differentiation and historical demography of wood stork populations in Brazilian wetlands: Implications for the conservation of the species and associated ecosystems Article · 13 Jul 2017
- Model-based analysis supports interglacial refugia over long-dispersal events in the diversification of two South American cactus species Article · 13 Apr 2016
- Anonymous nuclear markers reveal taxonomic incongruence and long-term disjunction in a cactus species complex with continental-island distribution in South America Article · Feb 2016
- Pleistocene Niche Stability and Lineage Diversification in the Subtropical Spider Araneus omnicolor (Araneidae) Article · 9 Apr 2015
- The evolution of phylogeographic data sets Article · Mar 2015
- Interglacial microrefugia and diversification of a cactus species complex: phylogeography and palaeodistributional reconstructions for Pilosocereus aurisetus and allies Article · Jun 2014
- Cross-species amplification of microsatellites reveals incongruence in the molecular variation and taxonomic limits of the Pilosocereus aurisetus group (Cactaceae) Article · Sep 2012
- Isolation, characterization, and cross‐species amplification of polymorphic microsatellite markers for Pilosocereus machrisii (Cactaceae) Article · Aug 2011
