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Researcher

Raúl Ortega

Computational Biology at EBD · EBD

Biography

Raúl Ortega is a computer engineer who works as Technical Manager in the BCB lab at the Doñana Biological Station (EBD-CSIC). He manages and maintains the high-performance computing cluster, develops and deploys scientific applications with Docker and Kubernetes, and trains users to make effective use of computing resources and workflows. He is the co-author of the avidaR R package, and ontoavida ontology, and has contributed C++ modifications to Avida; he also applies full‑stack development skills to integrate pipelines, APIs, and lightweight frontends. In the Fortuna Lab he builds a semantic graph database that enables knowledge exchange and interoperability among many disconnected and heterogeneous biomedical databases, to help the phage selection process to treat antibiotic-resistant bacterial infections.

Profile

Institution EBD
Position Computer Engineer (Technical Manager), BCB lab, EBD-CSIC
Home page https://bcb.ebd.csic.es/
Contact email raul.ortega@ebd.csic.es
ORCID 0000-0002-1306-5378

Research

Research topics

ResourcesBioinformatics Software and ToolsAnalysis packages (R, Python, etc.)Bioinformatics InfrastructureBiological DatabasesComputational TechniquesHigh-performance ComputingParallel ComputingDesktop applicationContainers ComputingWeb-serviceData Repositories
View all (2 more)
Workflow managersBiological Ontologies

Research lines

None

Publications 2 entries

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