RSAT Plants
A plant-dedicated server for the analysis of regulatory sequences
Basic Information
| Repository | https://rsat.eead.csic.es/plants |
| Documentation | https://github.com/rsa-tools |
| Main publication (DOI) | 10.1093/nar/gkac312 view |
| Contact email | compbio@eead.csic.es |
| Authors/Maintainers | Bruno Contreras Moreira |
| Type of application | Web-service, Docker container |
| Programming languages | PythonRCBASH / ShellPerlPHP |
| Keywords | Omics, Computational Methods, Resources, Transcriptomics, Data Analysis, Bioinformatics Software and Tools, Annotation tools, Analysis packages (R, Python, etc.), Data Visualization, Applications of Computational Biology, Bioinformatics enabling techniques, Standards in Computational Biology, Genomics, Bioinformatics Infrastructure, Expression Profiling, Computational models and simulations, Gene regulatory networks, Computational Techniques, Systems Biology, Genomic Annotation, Variant calling, Epigenomics, DNA methylation, 3D chromatin structure, Integrative Analysis, Regulatory biology, Containers Computing, Statistical Methods for Biology, Frequentist analysis, Web-service, Molecular evolution, Conservation Analysis, Data Repositories, FAIRfication, Bioinformatics education, Pathway analysis |
Technical details
| Input file formats | csv, tsv, gff, gtf, bed, fasta, Other |
| Output file formats | |
| Software compatibility | Linux, Mac, Windows |
| Hardware requirements | |
| Type of containerization | Docker |
| Wrapper type | None |
| Compatible tools | |
| Funding resource | National competitive funding, Regional/local competitive funding, Institutional funding, No funding |
| Funding support | National competitive funding, Regional/local competitive funding, Institutional funding, No funding |
Statistics
| Unique users (last 12 months) | |
| Unique users (since first release) | |
| Software downloads (last 12 months) | |
| Software downloads (since first release) | |
| Jobs submitted (last 12 months) | >10000 |
| Jobs submitted (since first release) | |
| Repository clones (last 12 months) | |
| Repository clones (since first release) | |
| Citations (last 12 months) | <100 (~18 as of 15/10/2026) |
| Citations (since first release) | 100-1000 (116 as of 15/10/2026) |
| Early-stage researcher effort (development) | |
| Early-stage researcher effort (maintenance) | |
| Technician-supported effort (development) | |
| Technician-supported effort (maintenance) | |
| Other effort (development) | |
| Other effort (maintenance) | |
| Total effort (development) | |
| Total effort (maintenance) |