GET_HOMOLOGUES
A versatile software package for pan-genome analysis
Basic Information
| Repository | https://github.com/eead-csic-compbio/get_homologues |
| Documentation | https://github.com/eead-csic-compbio/get_homologues |
| Seminar | Bruno Contreras presents the tool GET_HOMOLOGUES |
| Main publication (DOI) |
10.1128/AEM.02411-13
view 10.1007/978-1-4939-1720-4_14 view 10.3389/fpls.2017.00184 view 10.1007/978-1-0716-2429-6_9 view |
| Contact email | compbio@eead.csic.es |
| Authors/Maintainers | Bruno Contreras Moreira |
| Type of application | R/python package, Docker container, Conda package |
| Programming languages | RPerl |
| Keywords | Omics, Computational Methods, Resources, Transcriptomics, RNA Sequencing (RNA-seq), Data Analysis, Bioinformatics Software and Tools, Annotation tools, Analysis packages (R, Python, etc.), Data Visualization, Applications of Computational Biology, Model organisms, Genomics, Structural bioinformatics, Expression Profiling, Computational models and simulations, Computational Techniques, High-performance Computing, Parallel Computing, Genomic Annotation, Variant calling, Containers Computing, Molecular evolution, Conservation Analysis, Population genomics, Evolutionary modelling, Ecological modelling, Workflow managers, Sequence analysis, Sequence Alignment, Phylogenetic Analysis, Mutation Analysis and design |
Technical details
| Input file formats | fasta |
| Output file formats | tsv, Other |
| Software compatibility | Linux, Mac, Windows |
| Hardware requirements | |
| Type of containerization | Conda, Docker |
| Wrapper type | |
| Compatible tools | GET_PHYLOMARKERS |
| Funding resource | Institutional funding, No funding |
| Funding support | National competitive funding, Regional/local competitive funding, No funding |
Statistics
| Unique users (last 12 months) | |
| Unique users (since first release) | |
| Software downloads (last 12 months) | 100-1000 |
| Software downloads (since first release) | 1000-10000 |
| Jobs submitted (last 12 months) | |
| Jobs submitted (since first release) | |
| Repository clones (last 12 months) | |
| Repository clones (since first release) | |
| Citations (last 12 months) | 100-1000 |
| Citations (since first release) | 100-1000 (905 as of 15/10/2026) |
| Early-stage researcher effort (development) | |
| Early-stage researcher effort (maintenance) | |
| Technician-supported effort (development) | |
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| Total effort (maintenance) |