footprintDB
A database of transcription factors with annotated cis elements and binding interfaces
Basic Information
| Repository | https://footprintdb.eead.csic.es |
| Documentation | https://footprintdb.eead.csic.es/index.php?documentation |
| Main publication (DOI) |
10.1093/bioinformatics/btt663
view 10.1007/978-1-4939-6396-6_17 view |
| Contact email | compbio@eead.csic.es |
| Authors/Maintainers | Bruno Contreras Moreira |
| Type of application | Web-service |
| Programming languages | PerlPHP |
| Keywords | Omics, Computational Methods, Resources, Transcriptomics, Data Analysis, Bioinformatics Software and Tools, Annotation tools, Data Visualization, Applications of Computational Biology, Bioinformatics enabling techniques, Genomics, Functional genomics, Functional annotation, Function prediction, Bioinformatics Infrastructure, Biological Databases, Expression Profiling, Computational models and simulations, Gene regulatory networks, Systems Biology, Genomic Annotation, Variant calling, Epigenomics, Statistical Methods for Biology, Frequentist analysis, Web-service, Data Repositories, FAIRfication, Chromatin accessibility, Pathway analysis |
Technical details
| Input file formats | fasta, Other |
| Output file formats | html, Other |
| Software compatibility | Linux, Mac, Windows |
| Hardware requirements | Debian 12 virtual machine with 40GB disk 20GB RAM and 4 CPUs |
| Type of containerization | None |
| Wrapper type | |
| Compatible tools | RSAT plants |
| Funding resource | EU funding, No funding |
| Funding support | National competitive funding, Regional/local competitive funding, Institutional funding, No funding |
Statistics
| Unique users (last 12 months) | 1000-10000 |
| Unique users (since first release) | |
| Software downloads (last 12 months) | |
| Software downloads (since first release) | |
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| Repository clones (last 12 months) | |
| Repository clones (since first release) | |
| Citations (last 12 months) | <100 (~5 as of 15/10/2026) |
| Citations (since first release) | <100 (76 as of 15/10/2026) |
| Early-stage researcher effort (development) | |
| Early-stage researcher effort (maintenance) | |
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| Total effort (maintenance) |