3D-footprint
3D-footprint: a database for the structural analysis of protein-DNA complexes
Basic Information
| Repository | https://3dfootprint.eead.csic.es |
| Documentation | https://3dfootprint.eead.csic.es/tutorial.html |
| Main publication (DOI) | 10.1093/nar/gkp781 view |
| Contact email | compbio@eead.csic.es |
| Authors/Maintainers | Bruno Contreras Moreira |
| Type of application | Web-service |
| Programming languages | RJavaScriptC++Perl |
| Keywords | Omics, Computational Methods, Resources, Data Analysis, Bioinformatics Software and Tools, Annotation tools, Data Visualization, Applications of Computational Biology, Model organisms, Bioinformatics enabling techniques, Functional genomics, Functional annotation, Function prediction, Structural bioinformatics, Bioinformatics Infrastructure, Biological Databases, Computational models and simulations, Gene regulatory networks, Statistical Methods for Biology, Frequentist analysis, Web-service, Data Repositories, FAIRfication, Mutation Analysis and design, Proteomics |
Technical details
| Input file formats | fasta, pdb, Other |
| Output file formats | tsv, html |
| Software compatibility | Linux, Mac, Windows |
| Hardware requirements | Debian 12 virtual machine 32GB disk 20GB RAM 4 cpus |
| Type of containerization | Docker |
| Wrapper type | |
| Compatible tools | Protein Data Bank, footprintDB |
| Funding resource | Institutional funding, No funding |
| Funding support | Institutional funding, No funding |
Statistics
| Unique users (last 12 months) | 1000-10000 |
| Unique users (since first release) | >10000 |
| Software downloads (last 12 months) | |
| Software downloads (since first release) | |
| Jobs submitted (last 12 months) | |
| Jobs submitted (since first release) | |
| Repository clones (last 12 months) | |
| Repository clones (since first release) | |
| Citations (last 12 months) | <100 (~2 as of 15/10/2026) |
| Citations (since first release) | <100 (73 as of 15/10/2026) |
| Early-stage researcher effort (development) | |
| Early-stage researcher effort (maintenance) | |
| Technician-supported effort (development) | |
| Technician-supported effort (maintenance) | |
| Other effort (development) | |
| Other effort (maintenance) | |
| Total effort (development) | |
| Total effort (maintenance) |