Olive Atlas
OliveAtlas aims to provide interactive bioinformatics tools to explore gene expression data of olive tree. The current version of OliveAtlas includes data for most of the main organs of the olive tree variety Picual (leaves, flower, pollen, fruits, seeds, roots, stem, and meristem), and multiple responses to biotic and abiotic stresses such as cold, wound and infection of Verticillium dahliaea.
Basic Information
| Repository | https://www.oliveatlas.uma.es/ |
| Documentation | https://www.oliveatlas.uma.es/easy_gdb/help/00_help.php |
| Seminar | Amanda Bullones (IHSM-CSIC) presents the tool OliveAtlas |
| Main publication (DOI) | 10.3390/plants12061274 view |
| Contact email | claros@uma.es |
| Authors/Maintainers | Amanda Bullones Pendón |
| Type of application | Database / repository |
| Programming languages | RJavaScriptBASH / ShellPHP |
| Keywords | Omics, Computational Methods, Transcriptomics, RNA Sequencing (RNA-seq), Data Analysis, Data Visualization, Applications of Computational Biology, Expression Profiling, Plant genomics |
Technical details
| Input file formats | |
| Output file formats | csv, tsv, fasta, html |
| Software compatibility | Linux, Mac, Windows |
| Hardware requirements | Web browser |
| Type of containerization | None |
| Wrapper type | None |
| Compatible tools | |
| Funding resource | National competitive funding, Regional/local competitive funding, Institutional funding |
| Funding support |
Statistics
| Unique users (last 12 months) | |
| Unique users (since first release) | <100 |
| Software downloads (last 12 months) | |
| Software downloads (since first release) | |
| Jobs submitted (last 12 months) | |
| Jobs submitted (since first release) | |
| Repository clones (last 12 months) | |
| Repository clones (since first release) | |
| Citations (last 12 months) | <100 (~3 as of 15/10/2026) |
| Citations (since first release) | <100 (10 as of 15/10/2026) |
| Early-stage researcher effort (development) | |
| Early-stage researcher effort (maintenance) | |
| Technician-supported effort (development) | |
| Technician-supported effort (maintenance) | |
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| Total effort (maintenance) |