TFEA.ChIP
Transcription Factor Enrichment Analysis Tool: Identifies transcription factor binding sites that are overrepresented in the regulatory regions of a given set of genes. Requires a list of gene identifiers as input and provides a list of transcription factors whose binding sites are significantly enriched based on ChIP-seq experiments.
Basic Information
| Repository | https://www.iib.uam.es/TFEA.ChIP/ |
| Documentation | https://www.iib.uam.es/TFEA.ChIP/user_guide.pdf |
| Seminar | Yosra Berrouayel Dahour presents the tool TFEA.ChIP |
| Main publication (DOI) | 10.1093/bioinformatics/btz573 view |
| Contact email | lpeso@iib.uam.es |
| Authors/Maintainers | Luis del Peso Ovalle, Yosra Berrouayel Dahour |
| Type of application | Web-service, R/python package |
| Programming languages | R |
| Keywords | Omics, Computational Methods, Resources, Transcriptomics, RNA Sequencing (RNA-seq), Data Analysis, Bioinformatics Software and Tools, Analysis packages (R, Python, etc.), Expression Profiling, Computational models and simulations, Gene regulatory networks, Systems Biology, Network Biology |
Technical details
| Input file formats | csv, tsv |
| Output file formats | csv, tsv |
| Software compatibility | Linux, Mac, Windows |
| Hardware requirements | |
| Type of containerization | None |
| Wrapper type | None |
| Compatible tools | |
| Funding resource | National competitive funding, Regional/local competitive funding |
| Funding support |
Statistics
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| Citations (last 12 months) | <100 (~7 as of 15/10/2026) |
| Citations (since first release) | <100 (55 as of 15/10/2026) |
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