PCA_cluster
It clusters sites along a biological sequence (genome or proteins) according to the values of the observables provided in an input matrix. Applications: Chromatin states, protein domain decomposition, dynamical domains
Basic Information
| Repository | https://github.com/ugobas/PCA_cluster |
| Documentation | https://github.com/ugobas/PCA_cluster |
| Main publication (DOI) | 10.1105/tpc.114.124578 view |
| Contact email | ubastolla@cbm.csic.es |
| Authors/Maintainers | Ugo Bastolla |
| Type of application | Package for compiling the executable program |
| Programming languages | C |
| Keywords | Omics, Epigenomics, Chromatin accessibility |
Technical details
| Input file formats | bed, Other |
| Output file formats | bed, Other |
| Software compatibility | Linux |
| Hardware requirements | Any linux computer |
| Type of containerization | None |
| Wrapper type | None |
| Compatible tools | |
| Funding resource | National competitive funding |
| Funding support | No funding |
Statistics
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| Citations (last 12 months) | <100 (~20 as of 15/10/2026) |
| Citations (since first release) | 100-1000 (342 as of 15/10/2026) |
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