APID Interactomes: protein-protein interactions database
APID Interactomes provides a comprehensive collection of protein interactomes for more than 400 organisms based in the integration of known experimentally validated protein-protein physical interactions (PPIs). Construction of the interactomes is done with a methodological approach to report quality levels and coverage over the proteomes for each organism included.
Basic Information
| Repository | http://apid.dep.usal.es/ |
| Documentation | http://apid.dep.usal.es:8080/APID/init.action#tabr4 |
| Seminar | Javier De Las Rivas presents the tool APID Interactomes |
| Main publication (DOI) |
10.1093/nar/gkw363
view 10.1093/database/baz005 view |
| Contact email | jrivas@usal.es |
| Authors/Maintainers | Javier De Las Rivas |
| Type of application | Web-service, Database / repository |
| Programming languages | JavaJavaScriptMySQL |
| Keywords | Omics, Computational Methods, Resources, Data Analysis, Bioinformatics Software and Tools, Data Visualization, Applications of Computational Biology, Functional genomics, Functional annotation, Structural bioinformatics, Bioinformatics Infrastructure, Biological Databases, Systems Biology, Web-service, Data Repositories, Proteomics, Network Biology, Protein-Protein Interactions |
Technical details
| Input file formats | |
| Output file formats | csv, tsv, pdf, Other |
| Software compatibility | Linux, Mac, Windows |
| Hardware requirements | |
| Type of containerization | None |
| Wrapper type | None |
| Compatible tools | |
| Funding resource | National competitive funding |
| Funding support | No funding |
Statistics
| Unique users (last 12 months) | 2,000 |
| Unique users (since first release) | 50,000 |
| Software downloads (last 12 months) | |
| Software downloads (since first release) | |
| Jobs submitted (last 12 months) | 1,000 |
| Jobs submitted (since first release) | |
| Repository clones (last 12 months) | |
| Repository clones (since first release) | |
| Citations (last 12 months) | <100 (~2 as of 15/10/2026) |
| Citations (since first release) | 100-1000 (119 as of 15/10/2026) |
| Early-stage researcher effort (development) | |
| Early-stage researcher effort (maintenance) | |
| Technician-supported effort (development) | |
| Technician-supported effort (maintenance) | |
| Other effort (development) | Javier De Las Rivas |
| Other effort (maintenance) | Javier De Las Rivas |
| Total effort (development) | Javier De Las Rivas |
| Total effort (maintenance) | Javier De Las Rivas |