ILRA
Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs, correct homopolymer tracks and circulate plastids
Basic Information
| Repository | https://github.com/ThomasDOtto/ILRA |
| Documentation | https://github.com/ThomasDOtto/ILRA/blob/HEAD/README.md |
| Main publication (DOI) | 10.1093/bib/bbad248 view |
| Contact email | joseluis.ruiz@csic.es |
| Authors/Maintainers | José Luis Ruiz Rodríguez |
| Type of application | R/python package |
| Programming languages | RBASH / Shell |
| Keywords | Omics, Genomics, Genome Assembly, Genomic Annotation, Long-read sequencing |
Technical details
| Input file formats | |
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| Software compatibility | Linux |
| Hardware requirements | |
| Type of containerization | Conda |
| Wrapper type | None |
| Compatible tools | |
| Funding resource | National competitive funding |
| Funding support | National competitive funding |
Statistics
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| Citations (last 12 months) | <100 (~3 as of 15/10/2026) |
| Citations (since first release) | <100 (14 as of 15/10/2026) |
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