ETE Toolkit
Python package for building, comparing, annotating, manipulating and visualising phylogenetic trees.
Basic Information
| Repository | https://github.com/etetoolkit/ete |
| Documentation | https://etetoolkit.github.io/ete/ |
| Seminar | Jaime Huerta presents the tool ETE Toolkit, eggNOG, eggNOG-mapper |
| Main publication (DOI) | 10.1093/molbev/msw046 view |
| Contact email | jhcepas@gmail.com |
| Authors/Maintainers | Jaime Huerta Cepas |
| Type of application | R/python package, Command line pipeline |
| Programming languages | PythonJavaScript |
| Keywords | Omics, Computational Methods, Data Analysis, Data Visualization, Genomics, Genome Sequencing, Functional genomics, Functional annotation, Function prediction, Molecular evolution, Conservation Analysis, Population genomics, Phylogenetic Analysis, Evolutionary rates, Microbial communities, Metagenomics |
Technical details
| Input file formats | Other |
| Output file formats | Other |
| Software compatibility | Linux, Mac |
| Hardware requirements | |
| Type of containerization | Conda |
| Wrapper type | None |
| Compatible tools | TreeProfiler, PhyloCloud |
| Funding resource | No funding |
| Funding support | EU funding |
Statistics
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| Citations (last 12 months) | 100-1000 (~304 as of 15/10/2026) |
| Citations (since first release) | 1000-10000 (2231 as of 15/10/2026) |
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