SEQUENCE SLIDER (ARCIMBOLDO)
Expands partial polyalanine solutions by modelling side chains on the partial polypeptide trace with multiple sequence hypotheses, in a multisolution framework. Input: reflection data (.mtz and .hkl), a PDB file with the partial solution (e.g. from ARCIMBOLDO_SHREDDER) and a .bor configuration file. Remote-Homolog and Secondary-Homolog modes.
Basic Information
| Repository | https://pypi.org/project/arcimboldo/ |
| Documentation | http://chango.ibmb.csic.es/tutorial_slider_remote.html |
| Main publication (DOI) | 10.1107/S2059798320000339 view |
| Contact email | bugs-borges@ibmb.csic.es |
| Authors/Maintainers | Isabel Uson Finkenzeller |
| Type of application | Command line pipeline |
| Programming languages | Python |
| Keywords | Structural bioinformatics, Experimental structure determination |
Technical details
| Input file formats | |
| Output file formats | |
| Software compatibility | Linux, Mac |
| Hardware requirements | |
| Type of containerization | |
| Wrapper type | |
| Compatible tools | |
| Funding resource | |
| Funding support |
Statistics
| Unique users (last 12 months) | |
| Unique users (since first release) | |
| Software downloads (last 12 months) | |
| Software downloads (since first release) | >10000 (73866 as of 15/10/2026) |
| Jobs submitted (last 12 months) | |
| Jobs submitted (since first release) | |
| Repository clones (last 12 months) | |
| Repository clones (since first release) | |
| Citations (last 12 months) | <100 (~0 as of 15/10/2026) |
| Citations (since first release) | <100 (12 as of 15/10/2026) |
| Early-stage researcher effort (development) | |
| Early-stage researcher effort (maintenance) | |
| Technician-supported effort (development) | |
| Technician-supported effort (maintenance) | |
| Other effort (development) | |
| Other effort (maintenance) | |
| Total effort (development) | |
| Total effort (maintenance) |