SpineCounter
MATLAB code for a Graphic User Interface dedicated to automatically count and quantify dendritic spines from fluorescence microscopy images. It has been tested with .oib files from immunohistochemistries standard protocols. Quantification is not perfect, but it can be fine-tuned for particular sets of images and it is going to be always reproducible, as opposed to the work of manual operators who usually perform this tasks.
Version 2.0.0 (18 Nov 2020). Install: mpminstall gui_final
Basic Information
| Repository | https://www.mathworks.com/matlabcentral/fileexchange/83003-spinecounter |
| Documentation | |
| Main publication (DOI) | |
| Contact email | |
| Authors/Maintainers | José Luis Ruiz Rodríguez |
| Type of application | Desktop application |
| Programming languages | MATLAB |
| Keywords |
Technical details
| Input file formats | oib |
| Output file formats | |
| Software compatibility | Windows, Mac, Linux |
| Hardware requirements | |
| Type of containerization | |
| Wrapper type | |
| Compatible tools | |
| Funding resource | |
| Funding support |
Statistics
| Unique users (last 12 months) | |
| Unique users (since first release) | |
| Software downloads (last 12 months) | |
| Software downloads (since first release) | |
| Jobs submitted (last 12 months) | |
| Jobs submitted (since first release) | |
| Repository clones (last 12 months) | |
| Repository clones (since first release) | |
| Citations (last 12 months) | |
| Citations (since first release) | |
| Early-stage researcher effort (development) | |
| Early-stage researcher effort (maintenance) | |
| Technician-supported effort (development) | |
| Technician-supported effort (maintenance) | |
| Other effort (development) | |
| Other effort (maintenance) | |
| Total effort (development) | |
| Total effort (maintenance) |