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Detalle de: Automatic particle selection from electron micrographs using machine learning techniques

Title Automatic particle selection from electron micrographs using machine learning techniques
Abstract

The 3D reconstruction of biological specimens using Electron Microscopy is currently capable of achieving subnanometer resolution. Unfortunately, this goal requires gathering tens of thousands of projection images that are frequently selected manually from micrographs. In this paper we introduce a new automatic particle selection that learns from the user which particles are of interest. The training phase is semi-supervised so that the user can correct the algorithm during picking and specifically identify incorrectly picked particles. By treating such errors specially, the algorithm attempts to minimize the number of false positives. We show that our algorithm is able to produce datasets with fewer wrongly selected particles than previously reported methods. Another advantage is that we avoid the need for an initial reference volume from which to generate picking projections by instead learning which particles to pick from the user. This package has been made publicly available in the open-source package Xmipp.

Apa Reference Sorzano, C. O. S., Recarte, E., Alcorlo, M., Bilbao-Castro, J. R., San-Martín, C., Marabini, R., & Carazo, J. M. (2009). Automatic particle selection from electron micrographs using machine learning techniques. Journal of Structural Biology, 167(3), 252–260. 10.1016/j.jsb.2009.06.011
Doi 10.1016/j.jsb.2009.06.011
Publication Date Sep 2009
Publication Type Article
Researcher Carmen San Martín
Ontology Artificial Intelligence, Machine Learning in Biology, Bioinformatics Software and Tools, Experimental structure determination
Research Groups Structural and physical determinants of complex virus assembly
Tools

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