Detalle de: SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms
| Title | SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms |
| Abstract |
SQANTI3 is a tool designed for the quality control, curation and annotation of long-read transcript models obtained with third-generation sequencing technologies. Leveraging its annotation framework, SQANTI3 calculates quality descriptors of transcript models, junctions and transcript ends. With this information, potential artifacts can be identified and replaced with reliable sequences. Furthermore, the integrated functional annotation feature enables subsequent functional iso-transcriptomics analyses. |
| Apa Reference | Pardo-Palacios, F.J., Arzalluz-Luque, A., Kondratova, L., Salguero, P., Mestre-Tomás, J., Amorín, R., Estevan-Morió, E., Liu, T., Nanni, A., McIntyre, L., Tseng, E. & Conesa, A. (2024). SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms. Nature Methods, 21(5), 793-797. 10.1038/s41592-024-02229-2 |
| Doi | 10.1038/s41592-024-02229-2 |
| Publication Date | 20 Mar 2024 |
| Publication Type | Software |
| Researcher | Ana Conesa |
| Ontology | Transcriptomics, Genome Assembly, Functional annotation, Long-read sequencing |
| Research Groups | |
| Tools | SQANTI3 |