Ana Conesa
Genomics of Gene Expression · I2SYSBIO
Biography
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Ana Conesa is Research Professor at the Institute for Integrative Systems Biology (CSIC) in Valencia (Spain) and Courtesy Professor at the University of Florida. She graduated as Agricultural Engineer at the Polytechnical University of Valencia in 1993 and did her PhD in at the University of Leiden in the Netherlands. After a short appointment as bioinformatics project leader at TNO Quality of Life (The Netherlands) she obtained a Ramon y Cajal award and joined the Valencia Agricultural Research Institute in 2003. She held positions as group leader at the Principe Felipe Research Center (2007-2018), and as full professor at the University of Florida (2014-2020). In 2022 she became member of the Spanish Royal Academy of Engineer and of the Board of Directors of the International Society for Computational Biology. She is honorary member of the Spanish Society of Bioinformatics and Computational Biology and lead-coordinator of the CSIC Network for Computational Biology and Bioinformatics, with over 250 scientists |
Profile
| Institution | I2SYSBIO |
| Position | Research Professor |
| Home page | https://conesalab.org |
| Contact email | ana.conesa@csic.es |
| ORCID | 0000-0001-9597-311X |
BCB Hub
| BCB Committee | Expertise mapping, Support BCB Excellence, Talent attraction and training, Teaching links with University, Future Plan |
| BCB Tools | SQANTI3, DeCovid, MirCure, SQANTI-SIM, PaintOmics 4, tappAS, maSigPro, NOISeq |
| BCB Services |
Research
Research topics
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Research lines
- Development of methods for long-reads transcriptomics
- Statistial methods for multi-omics integration
- Single cell and spatial transcriptomics of tissue regeneration
- Long-reads multiomics data analysis
- Transcript divergence in aging and disease
View all (1 more)
Projects, networks, transfer & teaching
Research networks
National
- INB/ELIXIR-ES
International
- LongTREC, ELIXIR
Industry & knowledge transfer
Collaborating companies
- Biobam Bioinformatics, SL
- Oxford Nanopore, Ldt
- Wooble Genomics, Ldt
Spin-offs
- Biobam Bioinformatics, SL
Teaching
Master programs
- MSc in Bioinformatics - Universidad de Murcia and Universidad Politécnica de Cartagena - https://www.um.es/web/estudios/masteres/bioinformatica (BCB coordinator)
- MSc in Biostatistics and Bioinformatics - Universidad Católica de Murcia - https://masters.cemp.es/master-bioestadistica-bioinformatica-a/ (BCB coordinator)
Doctoral programs
- Doctoral Programme in Information Technologies, Communications and Computing - University of Valencia
Funded projects 47
- FAIRification of IsoSeq Evidence-driven annotation of the biodiversity
- NovelMO: Novel methodologies for multi-omics integrative analysis with cutting-edge sequencing technologies
- Genomic Insights into Three Locally Adapted Diatoms from the Albufera Coastal Lagoon
- Cells2Spine: Spatial Transcriptomics and Cell Communication Models applied to tissue regeneration and treatment in Spinal Cord Injury with Precision Nanomedicine
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- LongTREC: The Long Reads European Transcriptomics Consortium. The next generation transcriptome biology revealed by single molecule sequencing technologies
- Conexión CSIC en Biología Computacional y Bioinformática (BCBHub)
- Promoting CSIC presence within ELIXIR-Spain
- Broad transformation of CSIC’s digital capabilities through dedicated AI support from BCBHub
- Integración de datos multi-ómicos para la inferencia de modelos multi-capa de enfermedad
- Identifying the determinants of high protein content in seeds of Phaseolus
- Microbial Dark Matter
- A Novel Antimicrobial Approach To Combat Huanglongbing
- Development of methods for transcript quantification and differential expression analysis using long-read sequencing technologies
- Critical role for alternative splicing in conferring risk for T1D
- Genotype by Environment interaction analysis to understand mechanisms of T1D pathogenesis
- Galaxy platform for integrative metabolomics and transcriptomics analysis
- Facilitating knowledge exchange between microbiology and computer science students: a computationally intensive approach to discover new adaptation genes in extreme environment
- Developing the Functional Iso-Transcriptomics framework
- Development of multiomics methods for the integrative study of the Yeast Metabolic Cycle
- Novel methods for new challenges in the analysis of high-throughput sequencing data (NOVELSEQ)
- The Next Systems Biology: statistical methods for multiomics systems biology
- Computational methods for the integration of ChIP-seq, metabolomics and RNA-seq data to model chromatin metabolism
- STATegra: User-driven Development of Statistical Methods for Experimental Planning, Data Gathering, and Integrative Analysis of Next Generation Sequencing, Proteomics and Metabolomics data
- Desarrollo de nuevos conceptos y herramientas bioinformáticas de nueva generación para la priorización de genes candidatos en enfermedades y la elaboración de las correspondientes estrategias terapéuticas
- GENÓMICA Y TRANSCRIPTÓMICA DE LAS RUTAS DE DETOXIFICACIÓN EN DROSOPHILA
- ANÁLISIS DE GEMELOS DISCORDANTES PARA INVESTIGAR LA CORRELACIÓN ENTRE ALTERACIONES EN EXPRESIÓN Y METILACIÓN DE DNA EN LUPUS ERITEMATOSO SISTÉMICO
- Secuenciación, genotipado y desarrollo de herramientas genómicas para la mejora de los cítricos (CITRUSEQ)
- Exploring novel genome-transcriptome relationships by next generation sequencing approaches
- Pathogenomics: Redes transcripcionales controladoras de la virulencia en hongos filamentosos patógenos
- Pathomics: metabolomica e interactomica de la relacion huespedparasito
- Estudio de perfiles moleculares de expresión génica de pólipos con morfología serrada para la identificación de nuevos marcadores pronósticos de cáncer colorrectal
- Development of tools of new generation for gene expression data analysis and implementation in the improved GEPAS platform
- SISTEMAS INTEGRADOS INTELIGENTES EN CITRICOS (CITRUS-SII)
- Identification and modelling of molecular and cellular events of the immune response associated to the appearance of minimal hepatic encephalopathy in cirrhotic patients
- Plataformas de apoyo a la investigación en ciencias y tecnologías de la salud de la convocatoria 2017 de la Acción Estratégica en Salud
- Understanding the functional role of alternative splicing in crop traits
- Desarrollo de métodos estadísticos para la integración de múltiples datos ómicos y de secuenciación masiva
- Developing a European American NGS Network (DEANN)
- Integrative Analysis of TEDDY data to improve T1D diagnosis
- Development of Computational Approaches for the characterization and functional annotation of long-non-coding RNA (Annot-lncRNA)
- Ayuda complementaria para el proyecto STATegra
- Ayuda complementaria para PATHOGENOMICS - Metabolomics and Interactiomics of the relationship host-pathogen
- Técnico de Apoyo para Redes Transcripcionales Controladoras de Virulencia en Hongos Filamentosos Patógenos
- RBNAGE. Deciphering the role of RNA biological noise in aging using long-reads transcriptomics.
- Estudio de nuevas relaciones genoma-transcriptoma mediante técnicas de ultra-secuenciación
- Plataforma de Bioinformática
- Desarrollo de recursos computacionales para la caracterización y anotación funcional de ARN no codificante
Publications 181 entries
- Handling biological replicates in long-read RNA sequencing data by joining or not joining Article · 1 Sep 2026
- SQANTI-browser: visualization and curation of SQANTI3-classified long-read transcriptomes within the UCSC Genome Browser Preprint · 28 May 2026
- TUSCO: benchmarking transcriptome reconstruction with endogenous single-isoform controls Software · 24 Apr 2026
- Beneficial microbes mitigate molecular stress responses and accelerate developmental pathways in host animals during spaceflight Article · 18 Mar 2026
- To join or not to join: handling biological replicates in long-read RNA sequencing data Preprint · 12 Dec 2025
View all (176 more)
- Metabolite accumulation mediates the shift between the High Oxygen Consumption and Low Oxygen Consumption phases in the Yeast Metabolic Cycle Preprint · 2 Dec 2025
- Extracellular vesicles in the rhizosphere: targets to improve nutrient use efficiency of crops? Article · 9 Oct 2025
- Fetal rat neural progenitor cell transplantation after spinal cord injury improves motor recovery following optogenetic stimulation Article · Oct 2025
- Transcriptome Universal Single-isoform COntrol: A Framework for Evaluating Transcriptome reconstruction Quality Preprint · 28 Aug 2025
- The Spanish National Bioinformatics Institute (INB/ELIXIR-ES) Preprint · 29 May 2025
- MORE interpretable multi-omic regulatory networks to characterise phenotypes Article · 1 May 2025
- Long reads decipher genomes and transcriptomes and offer novel insights into biology and diseases Article · Apr 2025
- Transcriptomics in the era of long-read sequencing Article · 28 Mar 2025
- Quality assessment of long read data in multisample lrRNA-seq experiments using SQANTI-reads Article · 3 Mar 2025
- Notable challenges posed by long-read sequencing for the study of transcriptional diversity and genome annotation Article · 3 Mar 2025
- MOSim bulk and single cell multi layer regulatory network simulator Software · Mar 2025
- Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics Article · 20 Feb 2025
- Unravelling genotype-phenotype correlations in Stargardt disease using patient-derived retinal organoids Article · 19 Feb 2025
- Profiling the epigenome using long-read sequencing Article · Jan 2025
- Biological databases in the age of generative artificial intelligence Article · 26 Dec 2024
- Evaluation of strategies for evidence-driven genome annotation using long-read RNA-seq Article · 23 Dec 2024
- Revolutionizing genomics and medicine—one long molecule at a time Article · Nov 2024
- Steering research on mRNA splicing in cancer towards clinical translation Article · 9 Oct 2024
- scMaSigPro: differential expression analysis along single-cell trajectories Software · 1 Jul 2024
- Systematic assessment of long-read RNA-seq methods for transcript identification and quantification Article · 7 Jun 2024
- SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms Software · 20 Mar 2024
- Nucleotide-level distance metrics to quantify alternative splicing implemented in TranD Article · 10 Feb 2024
- SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark Software · 11 Dec 2023
- Mesenchymal Stromal Cells from Individuals with DNMT3A mut Clonal Hematopoiesis Instruct Young Healthy Hematopoietic Stem/Progenitor Cells Towards a Myeloid-Biased Aging Phenotype Resembling That of Patients with Clonal Cytopenia of Undetermined Significance (CCUS) Article · 2 Nov 2023
- Integration of multi-omics data to elucidate keystone unknown taxa within microbialite-forming ecosystems Article · 28 Jul 2023
- Differences in uterine and serum metabolome associated with metritis in dairy cows Article · May 2023
- Identification of food and nutrient components as predictors of Lactobacillus colonization Article · 21 Apr 2023
- New roles for AP-1/JUNB in cell cycle control and tumorigenic cell invasion via regulation of cyclin E1 and TGF-β2 Article · 9 Dec 2022
- Palmitate impairs circadian transcriptomics in muscle cells through histone modification of enhancers Article · 27 Oct 2022
- MAMBA: a model-driven, constraint-based multiomic integration method Preprint · 10 Oct 2022
- Independent phenotypic plasticity axes define distinct obesity sub-types Article · 12 Sep 2022
- ECCB2022: the 21st European Conference on Computational Biology Article · 1 Sep 2022
- Reference-based comparison of adaptive immune receptor repertoires Article · Aug 2022
- Transcriptional responses are oriented towards different components of the rearing environment in two Drosophila sibling species Article · 16 Jul 2022
- A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis Article · 7 Jul 2022
- A Nextflow pipeline for T-cell receptor repertoire reconstruction and analysis from RNA sequencing data Article · Jun 2022
- PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases Software · 24 May 2022
- Variation in leaf transcriptome responses to elevated ozone corresponds with physiological sensitivity to ozone across maize inbred lines Article · 17 May 2022
- acorde unravels functionally interpretable networks of isoform co-usage from single cell data Article · 5 Apr 2022
- MultiBaC: an R package to remove batch effects in multi-omic experiments Article · 3 Mar 2022
- Enhanced protein isoform characterization through long-read proteogenomics Article · 3 Mar 2022
- GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson’s disease Article · 28 Feb 2022
- Association Between Sex Hormone Levels and Clinical Outcomes in Patients With COVID-19 Admitted to Hospital: An Observational, Retrospective, Cohort Study Article · 27 Jan 2022
- A roadmap for the functional annotation of protein families: a community perspective Article · 1 Jan 2022
- The absence of the queuosine tRNA modification leads to pleiotropic phenotypes revealing perturbations of metal and oxidative stress homeostasis in Escherichia coli K12 Article · 2022
- Global Methylome Scores Correlate with Histological Subtypes of Colorectal Carcinoma and Show Different Associations with Common Clinical and Molecular Features Article · 14 Oct 2021
- Undisclosed, unmet and neglected challenges in multi-omics studies Article · 21 Jun 2021
- Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots Article · 1 Jun 2021
- Ozone sensitivity of diverse maize genotypes is associated with differences in gene regulation, not gene content Preprint · 7 May 2021
- STATegra: Multi-Omics Data Integration – A Conceptual Scheme With a Bioinformatics Pipeline Article · 4 Mar 2021
- Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes Article · 21 Jan 2021
- Multi-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients Article · 21 Jan 2021
- A multi-omic study for uncovering molecular mechanisms associated with hyperammonemia-induced cerebellar function impairment in rats Article · 6 Jan 2021
- Transcriptional Differences for COVID-19 Disease Map Genes between Males and Females Indicate a Different Basal Immunophenotype Relevant to the Disease Software · 1 Dec 2020
- Differentiation of non-aureus staphylococci species isolated from bovine mastitis by PCR-RFLP of groEL and gap genes in comparison to MALDI-TOF mass spectrometry Article · Dec 2020
- Padhoc: a computational pipeline for pathway reconstruction on the fly Article · Dec 2020
- MirCure: a tool for quality control, filter and curation of microRNAs of animals and plants Software · Dec 2020
- Sequencing and analysis of gerbera daisy leaf transcriptomes reveal disease resistance and susceptibility genes differentially expressed and associated with powdery mildew resistance Article · 30 Nov 2020
- A network approach to elucidate and prioritize microbial dark matter in microbial communities Article · 22 Sep 2020
- Harmonization of quality metrics and power calculation in multi-omic studies Article · 18 Jun 2020
- tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing Software · 18 May 2020
- Assessment of unconventional antimicrobial compounds for the control of ‘Candidatus Liberibacter asiaticus’, the causative agent of citrus greening disease Article · 25 Mar 2020
- MultiBaC: A strategy to remove batch effects between different omic data types Article · 4 Mar 2020
- A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6 Article · 27 Feb 2020
- Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps Article · 4 Nov 2019
- Mip6 binds directly to the Mex67 UBA domain to maintain low levels of Msn2/4 stress‐dependent mRNAs Article · 3 Nov 2019
- Differential Modulation of Quorum Sensing Signaling through QslA in Pseudomonas aeruginosa Strains PAO1 and PA14 Article · Nov 2019
- STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse Article · 31 Oct 2019
- Making multi-omics data accessible to researchers Article · 31 Oct 2019
- A Multiomics Study To Unravel the Effects of Developmental Exposure to Endosulfan in Rats: Molecular Explanation for Sex-Dependent Effects Article · 29 Aug 2019
- Differences in gene expression profiling and biomarkers between histological colorectal carcinoma subsets from the serrated pathway Article · 2 Aug 2019
- Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation Article · 12 Apr 2019
- Transcriptional profiling of the mutualistic bacterium Vibrio fischeri and an hfq mutant under modeled microgravity Article · 18 Dec 2018
- Tumor microenvironment-targeted poly-L-glutamic acid-based combination conjugate for enhanced triple negative breast cancer treatment Article · Dec 2018
- Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach Article · 30 Nov 2018
- Changes in the uterine metabolome of the cow during the first 7 days after estrus Article · 25 Nov 2018
- Two histologically colorectal carcinomas subsets from the serrated pathway show different methylome signatures and diagnostic biomarkers Article · 9 Nov 2018
- Overexpression of the vascular brassinosteroid receptor BRL3 confers drought resistance without penalizing plant growth Article · 8 Nov 2018
- Gene expression profile and molecular pathway datasets resulting from benzo(a)pyrene exposure in the liver and testis of adult tilapia Article · Oct 2018
- MOSim: Multi-Omics Simulation in R Preprint · 20 Sep 2018
- Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data Article · 1 Sep 2018
- Single-cell RNAseq for the study of isoforms—how is that possible? Article · 10 Aug 2018
- Transcriptome analysis reveals novel insights into the response of low-dose benzo(a)pyrene exposure in male tilapia Article · Aug 2018
- Comparative Metagenomics Provides Insight Into the Ecosystem Functioning of the Shark Bay Stromatolites, Western Australia Article · 25 Jun 2018
- Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in Pneumocystis Article · 1 Jun 2018
- PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data Article · 25 May 2018
- The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally Article · 29 Mar 2018
- SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification Article · 9 Feb 2018
- Multiomics Data Integration in Time Series Experiments Book / chapter · 2018
- GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text Article · 20 Dec 2017
- Growth of Chlamydia pneumoniae Is Enhanced in Cells with Impaired Mitochondrial Function Article · 5 Dec 2017
- Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes Article · 12 Oct 2017
- The eBioKit, a stand-alone educational platform for bioinformatics Article · 14 Sep 2017
- Identification and visualization of differential isoform expression in RNA-seq time series Software · 14 Sep 2017
- Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology Article · Sep 2017
- A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies Preprint · 30 Jun 2017
- Dynamic Gene Regulatory Networks of Human Myeloid Differentiation Article · Apr 2017
- Identification of miRNA from Bouteloua gracilis, a drought tolerant grass, by deep sequencing and their in silico analysis Article · Feb 2017
- RGmatch: matching genomic regions to proximal genes in omics data integration Article · Nov 2016
- Transcriptome modulation during host shift is driven by secondary metabolites in desertDrosophila Article · Sep 2016
- Making sense of big data in health research: Towards an EU action plan Article · 23 Jun 2016
- Separating common from distinctive variation Article · 6 Jun 2016
- spongeScan: A web for detecting microRNA binding elements in lncRNA sequences Article · 19 May 2016
- A survey of best practices for RNA-seq data analysis Article · 26 Jan 2016
- Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data Article · 1 Oct 2015
- Methylome profiling reveals functions and genes which are differentially methylated in serrated compared to conventional colorectal carcinoma Article · 17 Sep 2015
- Comparative RNA-seq analysis of the Tritrichomonas foetus PIG30/1 isolate from pigs reveals close association with Tritrichomonas foetus BP-4 isolate 'bovine genotype' Article · Sep 2015
- RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior Article · 27 Aug 2015
- Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package Software · 16 Jul 2015
- Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection Article · 18 May 2015
- Genome-wide changes in histone H3 lysine 27 trimethylation associated with bud dormancy release in peach Article · 28 Apr 2015
- GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training Article · 9 Apr 2015
- Two independent epigenetic biomarkers predict survival in neuroblastoma Article · 27 Feb 2015
- SEQUENCING OF 150 CITRUS VARIETIES: LINKING GENOTYPES TO PHENOTYPES Article · Jan 2015
- Comparative transcriptomics reveals striking similarities between the bovine and feline isolates of Tritrichomonas foetus: consequences for in silico drug-target identification Article · 5 Nov 2014
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium Article · 24 Aug 2014
- Relationship between genome and epigenome - challenges and requirements for future research Article · 18 Jun 2014
- Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series Software · 3 Jun 2014
- Plasma profile of pro-inflammatory cytokines and chemokines in cocaine users under outpatient treatment: influence of cocaine symptom severity and psychiatric co-morbidity Article · 22 May 2014
- Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia Article · Apr 2014
- STATegra EMS: an Experiment Management System for complex next-generation omics experiments Article · Mar 2014
- Pathway network inference from gene expression data Article · Mar 2014
- The common ground of genomics and systems biology Article · 2014
- Data integration in the era of omics: current and future challenges Article · 2014
- Defining the Genomic Signature of Totipotency and Pluripotency during Early Human Development Article · 17 Apr 2013
- Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis Article · 30 Oct 2012
- Development, Characterization and Experimental Validation of a Cultivated Sunflower (Helianthus annuus L.) Gene Expression Oligonucleotide Microarray Article · 26 Oct 2012
- Early gene expression events in the laminar abscission zone of abscission-promoted citrus leaves after a cycle of water stress/rehydration: involvement of CitbHLH1 Article · Oct 2012
- Qualimap: evaluating next-generation sequencing alignment data Article · 22 Aug 2012
- Expression profiling shows differential molecular pathways and provides potential new diagnostic biomarkers for colorectal serrated adenocarcinoma Article · 28 Jun 2012
- Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics Article · 22 Jun 2012
- Transcriptome Profiling of the Intoxication Response of Tenebrio molitor Larvae to Bacillus thuringiensis Cry3Aa Protoxin Article · 25 Apr 2012
- COST Action BM 1006 (SeqAhead): MC BUSINESS MEETING AND SCIENTIFIC MEETING Article · 22 Mar 2012
- Microarray analysis of Etrog citron (Citrus medica L.) reveals changes in chloroplast, cell wall, peroxidase and symporter activities in response to viroid infection Article · 15 Mar 2012
- Variable selection for multifactorial genomic data Article · Jan 2012
- Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua Article · 9 Dec 2011
- ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments Article · 14 Nov 2011
- Fortunella margarita Transcriptional Reprogramming Triggered by Xanthomonas citri subsp citri Article · 11 Nov 2011
- Large-scale transcriptional profiling and functional assays reveal important roles for Rho-GTPase signalling and SCL during haematopoietic differentiation of human embryonic stem cells Article · 21 Sep 2011
- Differential expression in RNA-seq: A matter of depth Article · 8 Sep 2011
- Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner Article · 7 Sep 2011
- Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing Article · 23 May 2011
- Modeling Human Endometrial Decidualization from the Interaction between Proteome and Secretome Article · 1 Mar 2011
- B2G-FAR, a species-centered GO annotation repository Article · 18 Feb 2011
- Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data Article · 23 Nov 2010
- A multiway approach to data integration in systems biology based on Tucker3 and N-PLS Article · Nov 2010
- Serial Expression Analysis: a web tool for the analysis of serial gene expression data Article · 4 Jun 2010
- Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling Article · 15 May 2010
- Initial Genomics of the Human Nucleolus Article · 26 Mar 2010
- Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium Article · 4 Jan 2010
- SIMAP-a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters Article · 10 Nov 2009
- Functional assessment of time course microarray data Article · Jun 2009
- Membrane transporters and carbon metabolism implicated in chloride homeostasis differentiate salt stress responses in tolerant and sensitive Citrus rootstocks Article · 4 Feb 2009
- Transcriptional Profiling of mRNA Expression in the Mouse Distal Colon Article · Dec 2008
- Direct functional assessment of the composite phenotype through multivariate projection strategies Article · Dec 2008
- Transcriptome analysis provides new insights into liver changes induced in the rat upon dietary administration of the food additives butylated hydroxytoluene, curcumin, propyl gallate and thiabendazole Article · Aug 2008
- Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology Article · 24 Jul 2008
- GEPAS, a web-based tool for microarray data analysis and interpretation Article · 19 May 2008
- Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments Article · 19 May 2008
- Blast2GO: A comprehensive suite for functional analysis in plant genomics Article · 30 Apr 2008
- High-throughput functional annotation and data mining with the Blast2GO suite Article · 15 Apr 2008
- Spatial differentiation in the vegetative mycelium of Aspergillus niger Article · Dec 2007
- Transcriptional response of Citrus aurantifolia to infection by Citrus tristeza virus Article · Oct 2007
- Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA Article · 22 May 2007
- Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance Article · 25 Jan 2007
- Calcium signaling in water stress-induced leaf abscission in citrus plants Book / chapter · 2007
- Development of the GENIPOL European flounder (Platichthys flesus) microarray and determination of temporal transcriptional responses to cadmium at low dose Article · 20 Sep 2006
- maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments Software · 15 Feb 2006
- Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research Article · 4 Aug 2005
- Examining the role of glutamic acid 183 in chloroperoxidase catalysis Article · Apr 2003
- Filamentous fungi as cell factories for heterologous protein production Article · May 2002
- Fungal peroxidases: molecular aspects and applications Article · Feb 2002
- Calnexin overexpression increases manganese peroxidase production in Aspergillus niger Article · Feb 2002
- C-terminal propeptide of the Caldariomyces fumago chloroperoxidase: an intramolecular chaperone? Article · 14 Aug 2001
- Expression of the Caldariomyces fumago chloroperoxidase in Aspergillus niger and characterization of the recombinant enzyme Article · May 2001
- Studies on the production of fungal peroxidases in Aspergillus niger Article · Jul 2000
