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Detalle de: Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package

Title Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package
Abstract

As the use of RNA-seq has popularized, there is an increasing consciousness of the importance of experimental design, bias removal, accurate quantification and control of false positives for proper data analysis. We introduce the NOISeq R-package for quality control and analysis of count data. We show how the available diagnostic tools can be used to monitor quality issues, make pre-processing decisions and improve analysis. We demonstrate that the non-parametric NOISeqBIO efficiently controls false discoveries in experiments with biological replication and outperforms state-of-the-art methods. NOISeq is a comprehensive resource that meets current needs for robust data-aware analysis of RNA-seq differential expression.

Apa Reference Tarazona, S., Furió-Tarí, P., Turrà, D., Pietro, A.D., Nueda, M.J., Ferrer, A. & Conesa, A. (2015). Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package. Nucleic Acids Research, gkv711. 10.1093/nar/gkv711
Doi 10.1093/nar/gkv711
Publication Date 16 Jul 2015
Publication Type Software
Researcher Ana Conesa
Ontology Transcriptomics, RNA Sequencing (RNA-seq), Expression Profiling, Experimental design, Non-parametric statistics
Research Groups
Tools NOISeq

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