Detalle de: From fragments to drugs: How AI and in silico methods accelerate fragment-to-lead optimization
| Title | From fragments to drugs: How AI and in silico methods accelerate fragment-to-lead optimization |
| Abstract |
Fragment-based drug design (FBDD) has become a key approach for mapping chemical space by starting with small, low-affinity fragments and building them into potent leads. Although these fragments bind weakly, strategies like fragment merging and linking can convert them into high-affinity molecules. More recently, Artificial Intelligence (AI) and Machine Learning (ML) have sped up this workflow by powering structure-guided optimization and generative design of new compounds. This review presents the state of FBDD: from biophysical screening and rapid structure elucidation to fragment growing, merging, and linking that elevate affinity while preserving ligand efficiency and drug-like properties. In particular, this review focuses on the integration of AI/ML approaches within these workflows. We compare experimental and computational strategies, summarize representative case studies, and assess how AI/ML now supports hit triage, compound priorization, and efficient exploration of chemical space. By emphasizing the role of AI-driven methods within established FBDD pipelines, we aim to provide a perspective on how these approaches complement traditional strategies. Limitations, common artifacts, and validation practices are discussed to clarify what reliably works and where open challenges remain in FBDD. |
| Apa Reference | Aledavood, E., Born, J. & Gil, C. (2026). From fragments to drugs: How AI and in silico methods accelerate fragment-to-lead optimization. European Journal of Medicinal Chemistry, 316, 118997. 10.1016/j.ejmech.2026.118997 |
| Doi | 10.1016/j.ejmech.2026.118997 |
| Publication Date | Oct 2026 |
| Publication Type | Article |
| Researcher | Carmen Gil |
| Ontology | Artificial Intelligence, Machine Learning in Biology, Computational models and simulations, Drug Discovery and design, Molecular Interactions/Docking |
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