Aureliano Bombarely
Biography
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Aureliano Bombarely is a researcher focused in the study of the plant genome evolution and the development of bioinformatic tools for genomic analysis. He graduated in the University of Malaga in 2001 and then he pursued a Ph.D. in Biochemistry and Molecular Biology in the same university under the supervision of Prof. Victoriano Valpuesta and Dr. Jose Federico Sanchez Sevilla. After his graduation in 2007, he moved to the Boyce Thompson Institute (Ithaca, NY, US) where he did worked as a postdoctoral researcher under the supervision of the Prof. Lukas Mueller in the development of the SGN database and the genome assembly and analysis of several species such as Solanum lycopersicum (tomato), Citrullus lanatus (watermelon) and Nicotiana benthamiana until 2013. In 2012, he also started to work with the Prof. Jeff Doyle at Cornell University in the study of the evolution of polyploids until 2014. After his postdoctoral period in Ithaca, NY, he moved to Blacksburg, VA with an Assistant Professor position in the department of Horticulture of Virginia Tech to work in several genomic aspects of the evolution of the genomes under domestication. During that time, he published the petunia genome as well as he started to work with other plant species such as Sinningia speciosa, Olea europaea and Asimina triloba. He stayed in Blacksburg until 2018, when he was recruited with the position of Associate Professor in the Dipartimento di Bioscienze at the Universita degli Studi di Milano (Milan, Italy) where he stayed until 2021. During this period, he continued working in several genomes and started to work with the TE landscape characterization. In 2021, he joined to the IBMCP with a position of CSIC Full Professor. |
Profile
| Institution | IBMCP |
| Position | CSIC Professor |
| Home page | https://bombarelylab.com/ |
| Contact email | abombarely@ibmcp.upv.es |
| ORCID | 0000-0001-6257-8914 |
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Research
Research topics
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Publications 83 entries
- Nitroalkylation Mediated by Nitro‐Fatty Acids Is Involved in Key Physiological Processes During Arabidopsis thaliana Development Article · 4 Oct 2026
- Ecotypes, Wolbachia, and urbanization shape Culex pipiens population structure in a West Nile virus hotspot Preprint · 13 May 2026
- Genomic evidence of hybridization between two species in Nicotiana sect. Alatae Article · 3 Apr 2026
- The Speciation Continuum in Bloom: Incomplete Lineage Sorting, Gene Flow, and Reticulate Evolution in Rapidly Diverging Plant Lineages Preprint · 1 Apr 2026
- Reference genome choice impacts SNP recovery but not evolutionary inference in young species Preprint · 6 Feb 2026
View all (78 more)
- Genomic insights into the rapid diversification of Petunia in a biodiversity hotspot in the South American grasslands Article · 17 Dec 2025
- The avocado pangenome reveals dynamic clustering and lineage-specific diversity of NLR genes Preprint · 28 Oct 2025
- Population structure and genetic diversity uncover hidden speciation in atypical Petunia (Solanaceae) populations Article · 29 Jul 2025
- Benchmarking of Low Coverage Sequencing Workflows for Precision Genotyping in Eggplant Preprint · 27 Oct 2024
- How many species are there? Lineage diversification and hidden speciation in Solanaceae from highland grasslands in southern South America Article · 28 Aug 2024
- HISTONE DEACETYLASE19 Controls Ovule Number Determination and Transmitting Tract Differentiation Article · 7 Dec 2023
- A snapshot of the transcriptome of Medicago truncatula (Fabales: Fabaceae) shoots and roots in response to an arbuscular mycorrhizal fungus and the pea aphid (Acyrthosiphon pisum) (Hemiptera: Aphididae) Article · 19 Jul 2023
- MetPlast: an R package to evaluate Metabolic Plasticity using Information Theory statistical framework Preprint · 28 Apr 2023
- Author Correction: Genome-Wide SNP discovery and genomic characterization in avocado (Persea americana Mill.) Article · 21 Feb 2023
- Genomics in neglected and underutilized fruit crops: A chromosome‐scale genome sequence of cherimoya (Annona cherimola) Article · 21 Feb 2023
- EasyGDB: a low-maintenance and highly customizable system to develop genomics portals Software · 24 Jun 2022
- Exploring transposable element-based markers to identify allelic variations underlying agronomic traits in rice Article · May 2022
- Comparative Analysis of Genotyping by Sequencing and Whole-Genome Sequencing Methods in Diversity Studies of Olea europaea L. Article · 19 Nov 2021
- Elucidation of the Origin of the Monumental Olive Tree of Vouves in Crete, Greece Article · 4 Nov 2021
- Combining transcriptome analysis and GWAS for identification and validation of marker genes in the Physalis peruviana-Fusarium oxysporum pathosystem Article · 22 Mar 2021
- Alternative Splicing Generates a MONOPTEROS Isoform Required for Ovule Development Article · Feb 2021
- Neutral and adaptive genomic variation in hybrid zones of two ecologically diverged Petunia species (Solanaceae) Article · 5 Dec 2020
- Guideline for genome transposon annotation derived from evaluation of popular TE identification tools Preprint · 12 Aug 2020
- DeepTE: a computational method for de novo classification of transposons with convolutional neural network Article · 16 May 2020
- Genome-Wide SNP discovery and genomic characterization in avocado (Persea americana Mill.) Article · 27 Dec 2019
- Draft Assembly of Phytophthora capsici from Long-Read Sequencing Uncovers Complexity Article · Dec 2019
- Whole-Genome Resequencing of Seven Eggplant (Solanum melongena) and One Wild Relative (S. incanum) Accessions Provides New Insights and Breeding Tools for Eggplant Enhancement Article · 8 Oct 2019
- Extensive phenotypic diversity in the cultivated Florist’s Gloxinia, Sinningia speciosa (Lodd.) Hiern, is derived from the domestication of a single founder population Article · 19 Aug 2019
- Autopolyploidization in switchgrass alters phenotype and flowering time via epigenetic and transcription regulation Article · 16 Aug 2019
- Transcriptome Landscape Variation in the Genus Thymus Article · 16 Aug 2019
- Tools and Strategies for Long-Read Sequencing and De Novo Assembly of Plant Genomes Article · Aug 2019
- Genome assembly provides insights into the genome evolution and flowering regulation of orchardgrass Article · 30 Jul 2019
- Genetic insights into the modification of the pre-fertilization mechanisms during plant domestication Article · 15 May 2019
- Genomics-based diversity analysis of Vanilla species using a Vanilla planifolia draft genome and Genotyping-By-Sequencing Article · 4 Mar 2019
- The Rise and Rise of Nicotiana benthamiana : A Plant for All Reasons Article · 25 Aug 2018
- siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass Article · 24 Jul 2018
- Roses for Darwin Article · 15 Jun 2018
- The Genomic Architecture of a Rapid Island Radiation: Recombination Rate Variation, Chromosome Structure, and Genome Assembly of the Hawaiian Cricket Laupala Article · 6 Jun 2018
- SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases Article · 1 Jan 2018
- De novo assembly of the zucchini genome reveals a whole-genome duplication associated with the origin of the Cucurbita genus Article · 4 Dec 2017
- Assessment of Genetic Diversity and Population Structure in Iranian Cannabis Germplasm Article · 15 Nov 2017
- Gene expression atlas of fruit ripening and transcriptome assembly from RNA-seq data in octoploid strawberry (Fragaria × ananassa) Article · 23 Oct 2017
- Species boundaries in the Astragalus cusickii complex delimited using molecular phylogenetic techniques Article · Sep 2017
- Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica Article · 23 Aug 2017
- Dissecting Tissue-Specific Transcriptomic Responses from Leaf and Roots under Salt Stress in Petunia hybrida Mitchell Article · 3 Aug 2017
- XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED Article · 25 Jul 2017
- Characterizing the allopolyploid species among the wild relatives of soybean: Utility of reduced representation genotyping methodologies Article · Jul 2017
- A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency Article · 19 Jun 2017
- Transcriptomic analysis of Olea europaea L. Roots during the Verticillium dahliae early infection process Article · Mar 2017
- ERAMOSA controls lateral branching in snapdragon Article · 1 Feb 2017
- Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data Article · 7 Jan 2017
- Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass Article · 8 Nov 2016
- Expression-level support for gene dosage sensitivity in three Glycine subgenus Glycine polyploids and their diploid progenitors Article · 15 Jul 2016
- Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida Article · 27 May 2016
- De novo assembly and functional annotation of Myrciaria dubia fruit transcriptome reveals multiple metabolic pathways for L-ascorbic acid biosynthesis Article · 24 Nov 2015
- An Endophyte Constructs Fungicide-Containing Extracellular Barriers for Its Host Plant Article · Oct 2015
- Collagen duplicate genes of bone and cartilage participate during regeneration of zebrafish fin skeleton Article · Sep 2015
- Central role of FaGAMYB in the transition of the strawberry receptacle from development to ripening Article · 22 May 2015
- Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives Article · 26 Feb 2015
- The Sol Genomics Network (SGN)--from genotype to phenotype to breeding Article · 26 Nov 2014
- Genome sequence of mungbean and insights into evolution within Vigna species Article · 11 Nov 2014
- Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins Article · 28 Oct 2014
- Complete Plastome Sequences from Glycine syndetika and Six Additional Perennial Wild Relatives of Soybean Article · 1 Oct 2014
- THE WILD SIDE OF A MAJOR CROP: SOYBEAN'S PERENNIAL COUSINS FROM DOWN UNDER Article · Oct 2014
- Mining transcriptomic data to study the origins and evolution of a plant allopolyploid complex Article · 20 May 2014
- Transcriptomic Analysis of Petunia hybrida in Response to Salt Stress Using High Throughput RNA Sequencing Article · 10 Apr 2014
- Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity Article · 20 Dec 2013
- The Genome Database for Rosaceae (GDR): year 10 update Article · 12 Nov 2013
- Genomic analysis of the native European Solanum species, S. dulcamara Article · 28 May 2013
- The SUD1 Gene Encodes a Putative E3 Ubiquitin Ligase and Is a Positive Regulator of 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase Activity in Arabidopsis Article · 1 Feb 2013
- From manual curation to visualization of gene families and networks across Solanaceae plant species. Article · 1 Jan 2013
- A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research Article · Dec 2012
- The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions Article · 25 Nov 2012
- Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective Article · 17 Aug 2012
- Genetic and genome-wide transcriptomic analyses identify co-regulation of oxidative response and hormone transcript abundance with vitamin C content in tomato fruit Article · 14 May 2012
- The tomato genome sequence provides insights into fleshy fruit evolution Article · May 2012
- DESIGNING A TRANSCRIPTOME NEXT-GENERATION SEQUENCING PROJECT FOR A NONMODEL PLANT SPECIES Article · Feb 2012
- Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit Article · 27 Jan 2011
- The 'PUCE CAFE' Project: the First 15K Coffee Microarray, a New Tool for Discovering Candidate Genes correlated to Agronomic and Quality Traits Article · 5 Jan 2011
- The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl Article · 8 Oct 2010
- Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studies Article · 17 Sep 2010
- TobEA: an atlas of tobacco gene expression from seed to senescence Article · 2010
- A Snapshot of the Emerging Tomato Genome Sequence Article · Mar 2009
