Rafael Torres Pérez
Structural Bioinformatics, Modeling and Biological Mechanisms · ICVV
Biography
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Senior Bioinformatics Scientist at the Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC) in La Rioja. Bioinformatician since 2004 in private companies and several national research centres, including the Bioinformatics Service (BioinfoGP) of the Centro Nacional de Biotecnología (CNB-CSIC). Regular collaborator in science outreach activities and co-author of a book on pseudosciences. Areas of expertise: bioinformatics, genomics, next-generation sequencing, computational biology, text mining, cancer genomics, plant genomics, population genetics, long-read sequencing, single-cell sequencing and CRISPR data analysis. (Description curated from publicly available data.) |
Profile
| Institution | ICVV |
| Position | Senior Bioinformatics Scientist, Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC) |
| Home page | https://www.linkedin.com/in/rafael-torres-perez-60091521/ |
| Contact email | rafael.torres@icvv.es |
| ORCID | 0000-0002-3696-4720 |
BCB Hub
| BCB Committee | Not a member |
| BCB Tools | |
| BCB Services | Cellular, Molecular and Bioinformatics Service at ICVV |
Research
Research topics
TranscriptomicsBioinformatics Software and ToolsApplications of Computational BiologyGenomicsGenome SequencingPopulation genomicsPlant genomicsSingle-cell omicsText miningLong-read sequencingGenome editing (CRISPR)
Research lines
None
Publications 34 entries
- Genome resequencing and custom genotyping elucidates the origin and dissemination history of an emblematic grapevine cultivar, ‘Tempranillo Tinto’ Article · 3 Sep 2025
- Double vulnerability of active-NRF2 lung squamous cell carcinoma to NRF2 and TRIM24 Article · 17 Jul 2025
- Tracking the origin of Tempranillo Tinto through whole genome resequencing and high-throughput genotyping Conference paper · 14 Jun 2024
- Variation and plasticity in life-history traits and fitness of wild Arabidopsis thaliana populations are not related to their genotypic and ecological diversity Article · 3 May 2024
- The trichome pattern diversity of Cardamine shares genetic mechanisms with Arabidopsis but differs in environmental drivers Article · 12 Apr 2024
View all (29 more)
- Genomic and immune landscape Of metastatic pheochromocytoma and paraganglioma Article · 28 Feb 2023
- Comprehensive molecular analysis of immortalization hallmarks in thyroid cancer reveals new prognostic markers Article · Aug 2022
- Spatial control of potato tuberization by the TCP transcription factor BRANCHED1b Article · 21 Mar 2022
- Envejecimiento cardiaco humano: transcriptómica y desarrollo de modelos celulares de envejecimiento Article · 12 Nov 2021
- Chronological and biological aging of the human left ventricular myocardium: Analysis of microRNAs contribution Article · 6 Jun 2021
- Genetic variation and association analyses identify genes linked to fruit set-related traits in grapevine Article · May 2021
- Is aromatic terpenoid composition of grapes in Northwestern Iberian wine cultivars related to variation in VviDXS1 gene? Article · 5 Feb 2021
- MYB transcription factors drive evolutionary innovations in Arabidopsis fruit trichome patterning Article · 4 Jan 2021
- VviUCC1 Nucleotide Diversity, Linkage Disequilibrium and Association with Rachis Architecture Traits in Grapevine Article · 29 May 2020
- Hsa‐miR‐139‐5p is a prognostic thyroid cancer marker involved in HNRNPF‐mediated alternative splicing Article · 28 Aug 2019
- Biochemical and transcriptomic analysis in berries of wild and cultivated grapevine ( Vitis vinifera L.) Article · Aug 2019
- Genetic variation for grapevine reproductive development Article · Aug 2019
- WeReview: CRISPR Tools—Live Repository of Computational Tools for Assisting CRISPR/Cas Experiments Software · 25 Jul 2019
- Recurrent Germline DLST Mutations in Individuals with Multiple Pheochromocytomas and Paragangliomas Article · Apr 2019
- Integrative multi-omics analysis identifies a prognostic miRNA signature and a targetable miR-21-3p/TSC2/mTOR axis in metastatic pheochromocytoma/paraganglioma Article · 2019
- A dataset of 9.896 single nuclear polymorphisms for 112 wild grapes, obtained with the GrapeReSeq 18K Vitis chip Dataset · 2019
- Gain-of-function mutations in DNMT3A in patients with paraganglioma Article · Dec 2018
- The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11 Article · 31 May 2018
- Targeted exome sequencing of Krebs cycle genes reveals candidate cancer predisposing mutations in pheochromocytomas and paragangliomas Article · 12 Oct 2017
- Catastrophic Unbalanced Genome Rearrangements Cause Somatic Loss of Berry Color in Grapevine Article · 15 Aug 2017
- PheoSeq Article · Jul 2017
- Early transcriptional response to biotic stress in mixed starter fermentations involving Saccharomyces cerevisiae and Torulaspora delbrueckii Article · Jan 2017
- New Genes Involved in Osmotic Stress Tolerance in Saccharomyces cerevisiae Article · 28 Sep 2016
- Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae Article · 22 Jan 2016
- Association analysis of grapevine bunch traits using a comprehensive approach Article · 4 Nov 2015
- Polymorphisms and minihaplotypes in the VvNAC26 gene associate with berry size variation in grapevine Article · 23 Oct 2015
- Developmental, transcriptome, and genetic alterations associated with parthenocarpy in the grapevine seedless somatic variant Corinto bianco Article · 9 Oct 2015
- The embryonic cell lineage of Caenorhabditis elegans : A modern hieroglyph Article · 28 Dec 2014
- Thermotolerance Responses in Ripening Berries of Vitis vinifera L. cv Muscat Hamburg Article · 25 May 2013