Miguel Pérez Enciso
Biography
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Miguel Pérez-Enciso is an ICREA Research Professor at the Centre for Research in Agricultural Genomics (CRAG), where he co-leads the Statistical and Population Genomics group of the Plant and Animal Genomics research programme. He has been an ICREA professor since 2003, with a period at Corteva Agriscience (2022-2024), and taught part-time at the Faculty of Veterinary Medicine of the Universitat Autònoma de Barcelona (2004-2022). His research interests include quantitative and population genetics, complex traits, machine learning and bioinformatics applied to agriculture and livestock breeding. |
Profile
| Institution | CRAG |
| Position | ICREA Research Professor (CRAG) |
| Home page | https://www.cragenomica.es/staff/miguel-perez-enciso |
| Contact email | miguel.perez@cragenomica.es |
| ORCID | 0000-0003-3524-995X |
BCB Hub
| BCB Committee | Not a member |
| BCB Tools | |
| BCB Services |
Research
Research topics
Machine Learning in BiologyBioinformatics Software and ToolsStatistical Methods for BiologyPopulation genomicsPlant genomicsAnimal genomicsQuantitative genetics
Research lines
None
Publications 94 entries
- Generative AI for predictive breeding: hopes and caveats Article · 11 Jun 2025
- Evaluating Genomic Selection in beef cattle: Insights from computer simulations using real SNP data Article · 23 Dec 2024
- On the holobiont ‘predictome’ of immunocompetence in pigs Article · 1 May 2023
- Computer generation of fruit shapes from DNA sequence Preprint · 22 Sep 2022
- Transposable Element Polymorphisms Improve Prediction Of Complex Agronomic Traits In Rice Preprint · 22 Feb 2022
View all (89 more)
- Corrigendum to “Automatic Fruit Morphology Phenome and Genetic Analysis: An Application in the Octoploid Strawberry” Article · 2022
- Correction to: Opportunities and limits of combining microbiome and genome data for complex trait prediction Article · Dec 2021
- Opportunities and limits of combining microbiome and genome data for complex trait prediction Article · 6 Aug 2021
- Phenomes: the current frontier in animal breeding Article · 5 Mar 2021
- Automatic Fruit Morphology Phenome and Genetic Analysis: An Application in the Octoploid Strawberry Article · 2021
- SeqBreed: a python tool to evaluate genomic prediction in complex scenarios Article · 10 Feb 2020
- Accuracy of genomic predictions using different imputation error rates in aquaculture breeding programs: A simulation study Article · Mar 2019
- Can Deep Learning Improve Genomic Prediction of Complex Human Traits? Article · 31 Aug 2018
- Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds Article · 28 Feb 2018
- Influence of epistasis on response to genomic selection using complete sequence data Article · 25 Aug 2017
- A Pathway-Centered Analysis of Pig Domestication and Breeding in Eurasia Article · 1 Jul 2017
- Evaluating Sequence-Based Genomic Prediction with an Efficient New Simulator Article · 1 Feb 2017
- The ‘heritability’ of domestication and its functional partitioning in the pig Article · 21 Sep 2016
- Sequence- vs. chip-assisted genomic selection: accurate biological information is advised Article · 9 May 2015
- The chimerical genome of I sla del C oco feral pigs ( C osta R ica), an isolated population since 1793 but with remarkable levels of diversity Article · 22 Apr 2015
- Characterization of the porcine nutrient and taste receptor gene repertoire in domestic and wild populations across the globe Article · Dec 2014
- 10th WCGALP in beautiful Vancouver Article · 16 Sep 2014
- Genome data from a sixteenth century pig illuminate modern breed relationships Article · 10 Sep 2014
- Pipeliner: software to evaluate the performance of bioinformatics pipelines for next‐generation resequencing Article · 28 Jun 2014
- Genomic relationships computed from either next‐generation sequence or array SNP data Article · 8 Jan 2014
- Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds Article · 2014
- From SNP co-association to RNA co-expression: Novel insights into gene networks for intramuscular fatty acid composition in porcine Article · 2014
- Future implications of full‐scale genomics for animal breeding: personalized indices? Article · 14 Jan 2013
- Conservation genomic analysis of domestic and wild pig populations from the Iberian Peninsula Article · 2013
- Porcine colonization of the Americas: a 60k SNP story Article · 19 Dec 2012
- Pig Domestication and Human-Mediated Dispersal in Western Eurasia Revealed through Ancient DNA and Geometric Morphometrics Article · 22 Nov 2012
- Analyses of pig genomes provide insight into porcine demography and evolution Article · Nov 2012
- SNP calling by sequencing pooled samples Article · 20 Sep 2012
- International conference on quantitative genetics 4: big science for complex traits Article · 11 Sep 2012
- Genome-wide association study for intramuscular fatty acid composition in an Iberian × Landrace cross1 Article · 1 Sep 2012
- Effect of the data family structure, tank replication and the statistical model, on the estimation of genetic parameters for body weight at 28 days of age in the Pacific white shrimp (Penaeus (Litopenaeus) vannamei Boone, 1931) Article · Apr 2012
- Disease Liability Prediction from Large Scale Genotyping Data Using Classifiers with a Reject Option Article · Jan 2012
- Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition Article · 2012
- Exploring the gonad transcriptome of two extreme male pigs with RNA-seq Article · 8 Nov 2011
- Association between plasma metabolites and gene expression profiles in five porcine endocrine tissues Article · 25 Jul 2011
- Qxpak.5: Old mixed model solutions for new genomics problems Article · 25 May 2011
- Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof Article · 16 Mar 2011
- Mitochondrial DNA diversity in wild boar from the Primorsky Krai Region (East Russia) Article · 11 Jan 2011
- Explaining the Genetic Basis of Complex Quantitative Traits through Prediction Models Article · 1 Dec 2010
- Massive parallel sequencing in animal genetics: wherefroms and wheretos Article · 10 Nov 2010
- Nucleotide variability of the porcine SERPINA6 gene and the origin of a putative causal mutation associated with meat quality Article · 4 Nov 2010
- Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip Article · 22 Oct 2010
- Leipzig: the dawn of the genomes era Article · 10 Sep 2010
- Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data Article · 9 Feb 2010
- A non‐synonymous mutation in a conserved site of the MTTP gene is strongly associated with protein activity and fatty acid profile in pigs Article · 6 Nov 2009
- Large-scale SNP genotyping in crosses between outbred lines: how useful is it? Article · 21 Oct 2009
- Exploratory Study on the Transcriptional Profile of Pigs Subclinically Infected with Porcine Circovirus Type 2 Article · Jul 2009
- Genomic scan for quantitative trait loci of chemical and physical body composition and deposition on pig chromosome X including the pseudoautosomal region of males Article · 11 Mar 2009
- Data modeling as a main source of discrepancies in single and multiple marker association methods Article · 23 Feb 2009
- Evaluation of FABP2 as candidate gene for a fatty acid composition QTL in porcine chromosome 8 Article · 21 Jan 2009
- A Genome Wide Detection of Quantitative Trait Loci on Pig Maternal Infanticide Behavior in a Large Scale White Duroc × Erhualian Resource Population Article · 6 Jan 2009
- Plant Polyphenol Intake Alters Gene Expression in Canine Leukocytes Article · 2009
- Impact of breed and sex on porcine endocrine transcriptome: a bayesian biometrical analysis Article · 2009
- A quantitative trait locus genome scan for porcine muscle fiber traits reveals overdominance and epistasis1 Article · 1 Dec 2008
- Nucleotide variability and linkage disequilibrium patterns at the porcine FABP5 gene Article · 20 Sep 2008
- Population and quantitative genetics for a cause Article · 18 Jul 2008
- Transcriptome architecture across tissues in the pig Article · 16 Apr 2008
- Selection in the Making: A Worldwide Survey of Haplotypic Diversity Around a Causative Mutation in Porcine IGF2 Article · 1 Mar 2008
- Emerging tools in quantitative trait loci detection Article · Dec 2007
- Genetical genomics: use all data Article · 2007
- Unexpected High Polymorphism at the FABP4 Gene Unveils a Complex History for Pig Populations Article · 1 Dec 2006
- Characterization of the porcine FABP5 gene and its association with the FAT1 QTL in an Iberian by Landrace cross Article · 21 Nov 2006
- Adipocyte fatty-acid binding protein is closely associated to the porcine FAT1 locus on chromosome 41 Article · 1 Nov 2006
- Polymorphisms of the porcine dopamine β ‐ hydroxylase gene and their relation to reproduction and piglet survivability in an Iberian × Meishan F 2 intercross Article · 16 May 2006
- Characterization of the porcine acyl‐CoA synthetase long‐chain 4 gene and its association with growth and meat quality traits Article · 3 May 2006
- Multiple association analysis via simulated annealing (MASSA) Article · 12 Jan 2006
- Many QTLs with minor additive effects are associated with a large difference in growth between two selection lines in chickens Article · Oct 2005
- Atlas: A Java-Based Tool for Managing Genotypes Article · 31 Aug 2005
- Assignment of RAD51C to porcine chromosome 12 and identification of intronic variability Article · Aug 2005
- On growth, fatness, and form: A further look at porcine Chromosome 4 in an Iberian × Landrace cross Article · May 2005
- Interspecific Chromosome-Wide Transcription Profiles Reveal the Existence of Mammalian-Specific and Species-Specific Chromosome Domains Article · Sep 2004
- Qxpak: a versatile mixed model application for genetical genomics and QTL analyses Article · 27 May 2004
- A comparison between methods for linkage disequilibrium fine mapping of quantitative trait loci Article · Feb 2004
- In Silico Study of Transcriptome Genetic Variation in Outbred Populations Article · 1 Jan 2004
- Linkage disequilibrium fine mapping of quantitative trait loci: A simulation study Article · 15 Sep 2003
- Estrogen receptor polymorphism in Landrace pigs and its association with litter size performance Article · Jul 2003
- A method for computing identity by descent probabilities and quantitative trait loci mapping with dominant (AFLP) markers Article · Jun 2002
- Assignment of the 2,4‐dienoyl‐CoA reductase ( DECR ) gene to porcine chromosome 4 Article · 28 Mar 2002
- On the mapping of quantitative trait loci at marker and non-marker locations Article · Feb 2002
- Assessment of genetic variation explained by markers for wool traits in sheep via a segment mapping approach Article · 1 Jul 2001
- Bayes factors for detection of Quantitative Trait Loci Article · 15 Mar 2001
- Computation of identity by descent probabilities conditional on DNA markers via a Monte Carlo Markov Chain method Article · Sep 2000
- A QTL for intramuscular fat and backfat thickness is located on porcine Chromosome 6 Article · 1 Apr 2000
- Robust QTL effect estimation using the Minimum Distance method Article · Sep 1999
- Sequential bulked typing: a rapid approach for detecting QTLs Article · Mar 1998
- A comparison between linear and poisson mixed models for litter size in iberian pigs Article · Jun 1993
- Genetic evaluation with uncertain parentage: a comparison of methods Article · Jun 1992
- A note on the use of mate selection in closed MOET breeding schemes Article · Dec 1991
- A note on prediction of response to artificial selection with indices of unequal information Article · Dec 1991