miRGate
miRGate is a curated database of human, mouse and rat miRNAs/mRNAs targets. It is designed to analyze miRNA and gene isoforms lists under a common and consistent space of annotations. Including all existing 3 UTR and the entirely known miRNAs. All Havana biotypes and ENCODE principal isoforms for the three organisms are also included.
Basic Information
| Repository | http://hansolo.ipb.csic.es/miRGate/ |
| Documentation | http://hansolo.ipb.csic.es/miRGate/ |
| Main publication (DOI) | 10.1093/database/bav035 view |
| Contact email | eduardo.andres@csic.es |
| Authors/Maintainers | Eduardo Andrés-León |
| Type of application | Web-service, Database / repository |
| Programming languages | |
| Keywords | Omics, Resources, Transcriptomics, RNA Sequencing (RNA-seq), Bioinformatics Software and Tools, Web-service, miRNA |
Technical details
| Input file formats | None (text parameters) |
| Output file formats | XML |
| Software compatibility | Linux, Mac, Windows |
| Hardware requirements | |
| Type of containerization | None |
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Statistics
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| Repository clones (since first release) | |
| Citations (last 12 months) | <100 (~1 as of 15/10/2026) |
| Citations (since first release) | 100-1000 (101 as of 15/10/2026) |
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