EasyGDB
EasyGDB is a system designed to simplify the implementation of genomics portals and expression atlases, minimizing their maintenance.
Basic Information
| Repository | https://github.com/noefp/easy_gdb |
| Documentation | https://github.com/noefp/easy_gdb |
| Seminar | Noé Fernández Pozo presents the tool EasyGDB |
| Main publication (DOI) | 10.1093/bioinformatics/btac412 view |
| Contact email | noe.fernandez.pozo@csic.es |
| Authors/Maintainers | Amanda Bullones Pendón, David Ferrer Zamora, Enrique López Gómez, Noé Fernández Pozo |
| Type of application | Web-service, Docker container |
| Programming languages | PHP |
| Keywords | Resources, Data Analysis, Bioinformatics Software and Tools, Data Visualization, Bioinformatics Infrastructure, Biological Databases, Web-service, Data Repositories |
Technical details
| Input file formats | tsv, bam, gff, fasta, json |
| Output file formats | fasta, pdf |
| Software compatibility | Linux, Mac, Windows |
| Hardware requirements | |
| Type of containerization | Docker |
| Wrapper type | None |
| Compatible tools | JBrowse, JBrowse2, BLAST |
| Funding resource | National competitive funding, Regional/local competitive funding, Institutional funding |
| Funding support | National competitive funding, Institutional funding |
Statistics
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| Citations (last 12 months) | <100 (~7 as of 15/10/2026) |
| Citations (since first release) | <100 (15 as of 15/10/2026) |
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