SYNBADm
MATLAB toolbox for the automated, optimisation-based design of synthetic biological circuits, based on ODE models and mixed-integer nonlinear programming (MINLP). It supports single- and multi-objective design of circuits from a library of parts and a set of specifications.
Basic Information
| Repository | https://github.com/ireneotero/SYNBADm |
| Documentation | https://sites.google.com/site/synbadm/ |
| Main publication (DOI) | 10.1093/bioinformatics/btw415 view |
| Contact email | irene.otero.muras@csic.es |
| Authors/Maintainers | Irene Otero-Muras, Julio Rodriguez Banga |
| Type of application | Desktop application |
| Programming languages | MATLABC |
| Keywords | Biosystems Modeling, Dynamical systems, Mathematical optimization, Synthetic biology |
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| Citations (last 12 months) | <100 (~1 as of 15/10/2026) |
| Citations (since first release) | <100 (35 as of 15/10/2026) |
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