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Tool

Cell4Rare

Code to explore the cell types involved in rare disease phenotypes, using healthy single-cell RNA-seq reference atlases (Human Protein Atlas and Tabula Sapiens).

Basic Information

Repository https://github.com/JNovoaR/Cell4Rare
Documentation
Main publication (DOI) 10.1093/bib/bbag426 view
Contact email
Authors/Maintainers Florencio Pazos Cabaleiro, Mónica Chagoyen
Type of application
Programming languages Python
Keywords Transcriptomics, Single-cell omics, Single-cell (scRNA-seq), Medicine

Technical details

Input file formats
Output file formats
Software compatibility
Hardware requirements
Type of containerization
Wrapper type
Compatible tools
Funding resource
Funding support
Statistics
Unique users (last 12 months)
Unique users (since first release)
Software downloads (last 12 months)
Software downloads (since first release)
Jobs submitted (last 12 months)
Jobs submitted (since first release)
Repository clones (last 12 months)
Repository clones (since first release)
Citations (last 12 months) <100 (~0 as of 15/10/2026)
Citations (since first release) <100 (0 as of 15/10/2026)
Early-stage researcher effort (development)
Early-stage researcher effort (maintenance)
Technician-supported effort (development)
Technician-supported effort (maintenance)
Other effort (development)
Other effort (maintenance)
Total effort (development)
Total effort (maintenance)

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