Mónica Chagoyen
Systems biomedicine · IC
Biography
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Tenured Scientist at the Cajal Neuroscience Center (CNC-CSIC) since April 2025, where she heads the Systems Biomedicine lab. She worked at the National Center for Biotechnology (CNB-CSIC) for 30 years: in the Biocomputing Unit (1995-2008), developing methods and applications in functional bioinformatics, integrated data analysis and biological data management; and in the Computational Systems Biology Group (2008-2025), on protein sequence and structure analysis and the functional study of biological networks, where she was also head of the Sequence Analysis and Structure Prediction Core Facility (2010-2024) and Tenured Scientist from 2021. She has been part-time assistant professor at the Universidad Europea de Madrid (Biotechnology degree, 2011-2012) and at the Universidad Complutense de Madrid (Computer Science Faculty, 2005-2009), and previously worked as a junior IT consultant at SEMA Group (1994-1995). (Description curated from publicly available data.) |
Profile
| Institution | IC |
| Position | Tenured Scientist, Head of the Systems Biomedicine lab, Cajal Neuroscience Center (CNC-CSIC) |
| Home page | https://www.linkedin.com/in/monica-chagoyen-55596053/ |
| Contact email | monica.chagoyen@csic.es |
| ORCID | 0000-0001-6911-1591 |
Research
Research topics
Research lines
Publications 64 entries
- Developmental and tissue expression breadth define distinct but overlapping classes of housekeeping genes Article · 21 Sep 2026
- Exploring cell-type associations of rare disease phenotypes using non-diseased cell atlases Software · Jul 2026
- From expansion to consolidation: two decades of Gene Ontology evolution Preprint · 6 Mar 2026
- Metabolite names and identifiers: how far are we from interoperability? Article · 20 Feb 2026
- Cell atlases and the developmental foundations of the phenotype Article · 9 Feb 2026
View all (59 more)
- A review on Gene Ontology evaluations Article · 2025
- Disentangling protein metabolic costs in human cells and tissues Article · 23 Dec 2024
- Differential expression and co-expression reveal cell types relevant to genetic disorder phenotypes Article · 28 Oct 2024
- Relevance of gut microbiome research in food safety assessment Article · 3 Oct 2024
- Roadmap for the integration of gastro‐intestinal (GI) tract microbiomes (human and domestic animal) in risk assessments under EFSA's remit Article · Feb 2024
- CoMentG: comprehensive retrieval of generic relationships between biomedical concepts from the scientific literature Software · 1 Jan 2024
- Each Cellular Compartment Has a Characteristic Protein Reactive Cysteine Ratio Determining Its Sensitivity to Oxidation Article · 14 Jun 2023
- MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis Software · 13 May 2023
- PMIDigest: Interactive Review of Large Collections of PubMed Entries to Distill Relevant Information Software · 19 Apr 2023
- Urinary Metabolomics Study on the Protective Role of Cocoa in Zucker Diabetic Rats via 1H-NMR-Based Approach Article · 4 Oct 2022
- Network-Based Methods for Approaching Human Pathologies from a Phenotypic Point of View Article · 17 Jun 2022
- CoMent: Relationships Between Biomedical Concepts Inferred From the Scientific Literature Software · Jun 2022
- Predicting biological pathways of chemical compounds with a profile-inspired approach Software · 12 Jun 2021
- Systematic identification of genetic systems associated with phenotypes in patients with rare genomic copy number variations Article · 10 Aug 2020
- Phosphorylation-Related Crosstalk Between Distant Regions of the Core Region of the Coat Protein Contributes to Virion Assembly of Plum Pox Virus Article · Apr 2020
- Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program Article · 17 Sep 2019
- The Opposing Roles of PIK3R1/p85α and PIK3R2/p85β in Cancer Article · Apr 2019
- Bacterial Feature Finder (BaFF)—a system for extracting features overrepresented in sets of prokaryotic organisms Software · 14 Feb 2019
- Large expert-curated database for benchmarking document similarity detection in biomedical literature search Article · 1 Jan 2019
- Applications of molecular networks in biomedicine Article · 1 Jan 2019
- Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology Article · 16 Jan 2018
- Factors affecting interactome-based prediction of human genes associated with clinical signs Article · 17 Jul 2017
- Rare disease relations through common genes and protein interactions Article · Jun 2016
- MBROLE 2.0—functional enrichment of chemical compounds Software · 15 Apr 2016
- Characterization of clinical signs in the human interactome Article · 9 Feb 2016
- Clinical, genetics and bioinformatics characterization of a campomelic dysplasia case report Article · Feb 2016
- Functional Analysis of Metabolomics Data Book / chapter · 2016
- Guanine nucleotide binding to the Bateman domain mediates the allosteric inhibition of eukaryotic IMP dehydrogenases Article · 12 Nov 2015
- Practical analysis of specificity-determining residues in protein families Article · 2 Jul 2015
- Practical protein bioinformatics Book / chapter · 2015
- Strigolactone promotes degradation of DWARF14, an α/β hydrolase essential for strigolactone signaling in Arabidopsis Article · 1 Mar 2014
- Molecular determinants of the ATP hydrolysis asymmetry of the CCT chaperonin complex Article · 12 Feb 2014
- Functional signature for the recognition of specific target mRNAs by human Staufen1 protein Article · 25 Jan 2014
- Structural characterization of T7 tail machinery reveals a conserved tubular structure among otherPodoviridaefamily members and suggests a common mechanism for DNA delivery Article · Oct 2013
- Structural characterization of the bacteriophage T7 tail machinery Article · Sep 2013
- Tools for the functional interpretation ofmetabolomic experiments Article · 14 Oct 2012
- Nuclear but not cytosolic phosphoinositide 3-kinase beta has an essential function in cell survival Article · 1 May 2011
- MBRole: Enrichment analysis of metabolomic data Software · 5 Jan 2011
- Genetic polymorphisms among C57BL/6 mouse inbred strains Article · 27 May 2010
- Quantifying the biological significance of gene ontology biological processes--implications for the analysis of systems-wide data Article · 4 Dec 2009
- SENT: Semantic features in text Article · 20 May 2009
- Named entity recognition and normalization: A domain-specific language approach Book / chapter · 2009
- Assessment of protein set coherence using functional annotations Article · 20 Oct 2008
- Functional Classification of Genes Using Non-Negative Independent Component Analysis Book / chapter · 2008
- CBR-Tagger Conference paper · 2008
- GENECODIS: A web-based tool for finding significant concurrent annotations in gene lists Article · 4 Jan 2007
- BioNMF: A versatile tool for non-negative matrix factorization in biology Article · 28 Jul 2006
- A literature-based similarity metric for biological processes Article · 26 Jul 2006
- Integrated analysis of gene expression by association rules discovery Article · 7 Feb 2006
- Discovering semantic features in the literature: A foundation for building functional associations Article · 26 Jan 2006
- Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology Article · Aug 2005
- Designing and executing scientific workflows with a programmable integrator Article · 1 Apr 2004
- FEMME database: Topologic and geometric information of macromolecules Article · Oct 2003
- EMDep: A web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information Article · Oct 2003
- New electron microscopy database and deposition system Article · Nov 2002
- Design and realization of an on-line database for multidimensional microscopic images of biological specimens Article · Apr 1999
- Organising multi-dimensional biological image information: The BioImage database Article · 1 Jan 1999
- A variant to the 'random approximation' of the reference-free alignment algorithm Article · Nov 1996
- Wavelet-based denoising methods: A comparative study with applications in microscopy Conference paper · 23 Oct 1996
