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Tool

PMIDigest

Summarises large sets of PubMed publications into an interactive local HTML report, where articles can be sorted and grouped, MeSH terms highlighted and the citation network explored.

Basic Information

Repository https://github.com/JNovoaR/PMIDigest
Documentation https://github.com/JNovoaR/PMIDigest/blob/HEAD/README.md
Main publication (DOI) 10.3390/genes14040942 view
Contact email pazos@cnb.csic.es
Authors/Maintainers Florencio Pazos Cabaleiro, Mónica Chagoyen
Type of application Command line pipeline
Programming languages PerlJavaScript
Keywords Data Visualization, Text mining

Technical details

Input file formats
Output file formats
Software compatibility Linux, Mac, Windows
Hardware requirements
Type of containerization
Wrapper type
Compatible tools
Funding resource
Funding support
Statistics
Unique users (last 12 months)
Unique users (since first release)
Software downloads (last 12 months)
Software downloads (since first release)
Jobs submitted (last 12 months)
Jobs submitted (since first release)
Repository clones (last 12 months)
Repository clones (since first release)
Citations (last 12 months) <100 (~2 as of 15/10/2026)
Citations (since first release) <100 (12 as of 15/10/2026)
Early-stage researcher effort (development)
Early-stage researcher effort (maintenance)
Technician-supported effort (development)
Technician-supported effort (maintenance)
Other effort (development)
Other effort (maintenance)
Total effort (development)
Total effort (maintenance)

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