pMT
Detects significant protein co-evolution by computing p-values for tree-similarity correlations against a genome-wide background. Distributed as an academic R version with an E. coli dataset.
Basic Information
| Repository | http://csbg.cnb.csic.es/pazos/pMT/ |
| Documentation | http://csbg.cnb.csic.es/pazos/pMT/README_pMT.txt |
| Main publication (DOI) | 10.1093/bioinformatics/btv102 view |
| Contact email | |
| Authors/Maintainers | Florencio Pazos Cabaleiro, David Juan Sopeña |
| Type of application | Command line pipeline |
| Programming languages | R |
| Keywords | Molecular evolution, Phylogenetic Analysis, Protein-Protein Interactions, Phylogenomics |
Technical details
| Input file formats | |
| Output file formats | |
| Software compatibility | |
| Hardware requirements | |
| Type of containerization | |
| Wrapper type | |
| Compatible tools | |
| Funding resource | |
| Funding support |
Statistics
| Unique users (last 12 months) | |
| Unique users (since first release) | |
| Software downloads (last 12 months) | |
| Software downloads (since first release) | |
| Jobs submitted (last 12 months) | |
| Jobs submitted (since first release) | |
| Repository clones (last 12 months) | |
| Repository clones (since first release) | |
| Citations (last 12 months) | <100 (~0 as of 15/10/2026) |
| Citations (since first release) | <100 (31 as of 15/10/2026) |
| Early-stage researcher effort (development) | |
| Early-stage researcher effort (maintenance) | |
| Technician-supported effort (development) | |
| Technician-supported effort (maintenance) | |
| Other effort (development) | |
| Other effort (maintenance) | |
| Total effort (development) | |
| Total effort (maintenance) |