Bacteria Segmentation/Tracking Tool
Machine-learning-based segmentation and lineage tracking of dense bacterial populations using Fiji (ImageJ) as a front-end. It leverages the machine learning capabilities of Fiji provided through Weka and custom-made Python scripts.
Basic Information
| Repository | https://osf.io/gdxen/ |
| Documentation | |
| Main publication (DOI) | 10.1007/978-1-4939-9686-5_19 view |
| Contact email | javier.buceta@csic.es |
| Authors/Maintainers | Javier Buceta |
| Type of application | |
| Programming languages | Python |
| Keywords | Machine Learning in Biology, Image analysis |
Technical details
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Statistics
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| Citations (last 12 months) | <100 (~1 as of 15/10/2026) |
| Citations (since first release) | <100 (24 as of 15/10/2026) |
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