SQANTI-reads
Read-level quality control framework for replicated long-read RNA-seq experiments, built on SQANTI3. The number and distribution of reads and of unique junction chains in SQANTI3 structural categories are used as quality metrics, with multisample visualizations by experimental design factors to identify outliers. Part of the SQANTI3 repository.
Basic Information
| Repository | https://github.com/ConesaLab/SQANTI3 |
| Documentation | https://github.com/ConesaLab/SQANTI3/wiki/SQANTI-reads |
| Main publication (DOI) | 10.1038/s41467-026-72089-1 view |
| Contact email | pablo.atienza@csic.es |
| Authors/Maintainers | Carolina Monzó Cataluña, Pablo Atienza López |
| Type of application | Docker container, R/python package |
| Programming languages | PythonRBASH / ShellJavaScript |
| Keywords | Transcriptomics, RNA Sequencing (RNA-seq), Long-read sequencing |
Technical details
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| Software compatibility | Linux, Mac |
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| Type of containerization | Docker |
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| Citations (last 12 months) | <100 (~1 as of 15/10/2026) |
| Citations (since first release) | <100 (1 as of 15/10/2026) |
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