SQANTI-browser
Visualisation of SQANTI3 long-read defined transcriptomes in the UCSC Genome Browser: converts SQANTI3 outputs into interactive UCSC Track Hubs that preserve the full transcript structural metadata, enabling dynamic filtering and evidence-guided curation alongside public resource tracks.
Basic Information
| Repository | https://github.com/ConesaLab/SQANTI-browser |
| Documentation | https://github.com/ConesaLab/SQANTI-browser/wiki |
| Main publication (DOI) | 10.64898/2026.05.25.727625 |
| Contact email | carolmonzoc@gmail.com |
| Authors/Maintainers | Carolina Monzó Cataluña |
| Type of application | Docker container, R/python package |
| Programming languages | HTMLPythonBASH / ShellC++ |
| Keywords | Transcriptomics, Data Visualization, Genomic Annotation, Long-read sequencing |
Technical details
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| Software compatibility | Linux |
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| Type of containerization | Conda, Docker, Singularity/AppTainer |
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Statistics
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| Citations (last 12 months) | <100 (~0 as of 15/10/2026) |
| Citations (since first release) | <100 (0 as of 15/10/2026) |
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