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Detalle de: Golden Standard: a complete standard, portable, and interoperative MoClo tool for model and non-model proteobacteria

Title Golden Standard: a complete standard, portable, and interoperative MoClo tool for model and non-model proteobacteria
Abstract

Modular cloning has become a benchmark technology in synthetic biology. However, a notable disparity exists between its remarkable development and the need for standardization to facilitate seamless interoperability among systems. The field is thus impeded by an overwhelming proliferation of organism-specific systems that frequently lack compatibility. To overcome these issues, we present Golden Standard (GS), a Type IIS assembly method underpinned by the Standard European Vector Architecture. GS unlocks modular cloning applications for most bacteria, and delivers combinatorial multi-part assembly to create genetic circuits of up to twenty transcription units (TUs). Reliance on MoClo syntax renders GS fully compatible with many existing tools and it sets the path towards efficient reusability of available part libraries and assembled TUs. GS was validated in terms of DNA assembly, portability, interoperability and phenotype engineering in α-, β-, γ- and δ-proteobacteria. Furthermore, we provide a computational pipeline for parts characterization that was used to assess the performance of GS parts. To promote community-driven development of GS, we provide a dedicated web-portal including a repository of parts, vectors, and Wizard and Setup tools that guide users in designing constructs. Overall, GS establishes an open, standardized framework propelling the progress of synthetic biology as a whole.

Apa Reference Blázquez, B., León, D.S., Torres-Bacete, J., Gómez-Luengo, Á., Kniewel, R., Martínez, I., Sordon, S., Wilczak, A., Salgado, S., Huszcza, E., Popłoński, J., Prieto, A. & Nogales, J. (2023). Golden Standard: a complete standard, portable, and interoperative MoClo tool for model and non-model proteobacteria. Nucleic Acids Research, 51(19), e98-e98. 10.1093/nar/gkad758
Doi 10.1093/nar/gkad758
Publication Date 18 Sep 2023
Publication Type Software
Researcher David San León Granado
Ontology Benchmarking, FAIRfication, Development, Synthetic biology
Research Groups
Tools Golden Standard

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