José Tomás Matus
Transcriptional Orchestration of Plant Secondary MetaboliSm - TOMSlab · I2SYSBIO
Biography
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Tomás Matus es biólogo vegetal y doctor en Ciencias Agrícolas (PUC, Chile), interesado en el uso de herramientas genómicas y de biología de sistemas para el estudio de la regulación redes de desarrollo y metabolismo de las plantas. Ha sido postdoc en el Centro de Investigación en Genómica Agrícola (CRAG, 2008-2013, 2015-2019), en el laboratorio de José Luis Riechmann, adquiriendo experiencia en tecnologías ómicas para entender el desarrollo de las flores en Arabidopsis. Recientemente comenzó una línea de investigación en biología de sistemas de cultivos frutales, utilizando el desarrollo de los frutos del tomate y la vid como modelos para entender la morfogénesis, el crecimiento y la maduración de frutos climatéricos y no climatéricos (Grupo de Investigación Orquestación Transcripcional del Metabolismo). Recibió una beca EMBO de postdoctorado de larga duración (2010-2012) y ahora se acaba de incorporar al Instituto de Biología Integrativa de Sistemas I2SysBio (Universitat de València-CSIC) a través de un contrato del programa Ramón y Cajal (2019) en la Universitat de València. |
Profile
| Institution | I2SYSBIO |
| Position | Investigador Programa Ramón y Cajal |
| Home page | https://tomsbiolab.com/ |
| Contact email | tomas.matus@gmail.com |
| ORCID | 0000-0002-9196-1813 |
BCB Hub
| BCB Committee | Not a member |
| BCB Tools | |
| BCB Services |
Research
Research topics
TranscriptomicsGenomicsGene regulatory networksSystems Biology
Research lines
None
Projects, networks, transfer & teaching
Industry & knowledge transfer
Patents
- Improvement of resveratrol and oxyresveratrol production in Morus
Funded projects 8
- Genomic Insights into Three Locally Adapted Diatoms from the Albufera Coastal Lagoon
- DECIPher - Decoding Environmental Communication and Integration Pathways to Enhance plant acclimation to stress.
- METACELL. Multi-Omics Meta-Analyses to Elucidate Plant Specialized Metabolic Pathways and Identify Regulatory Factors Using Cell Suspension Cultures as Model Systems.
- Development and implementation of standardised processes (pipelines) for genome assembly and annotation.
View all (4 more)
- ENIGmA: Exploring Novel plant-to-plant Intercommunication pathways Governing environmental Acclimation.
- The Grapevine Genomics Encyclopedia: an innovative portal to integrate knowledge, resources and services for the grape scientific community and industry.
- VALINET. Validation and visualization of gene regulatory networks of plant specialized metabolism using integrative omics methods.
- Good Vibes: how do plants recognise and respond to pollinator vibroacoustic signals?
Publications 57 entries
- The hidden geometry of electrostatic pollination Other · 3 Sep 2026
- Integrated multi-omics analyses reveal that p-coumaroyl-CoA 2′-hydroxylases act upstream of stilbene synthases to mediate oxyresveratrol biosynthesis in mulberry (Morus alba) Article · Jul 2026
- Hydroxylated monoterpenes mimic bacterial attack to trigger jasmonate-dependent self-amplifying immunity in tomato Preprint · 10 Jun 2026
- Dissecting gene regulatory networks driving grape berry ripening using comparative systems biology across nonclimacteric fleshy fruits: the NAC-centered hierarchy revisited Article · 28 Apr 2026
- From wing movements to cues and signals: mechanisms and functions of flight-generated sounds in insects Article · 11 Feb 2026
View all (52 more)
- The non-conventional peptidome of Arabidopsis flower development Article · Feb 2026
- Standardized Protocols and Bioinformatic Pipelines for Conducting DAP-seq Experiments in Non-model Plant Crops Book / chapter · 2026
- Inferring Gene Networks from High-Throughput Transcriptomes Book / chapter · 2026
- Consistent drought regulation in grapevine is driven by directional transcription factor activity Preprint · 16 Nov 2025
- Reduced stomatal density improves water-use efficiency in grapevine under climate scenarios of decreased water availability Article · 7 Aug 2025
- PME10 Is a Pectin Methylesterase Driving PME Activity and Immunity Against Botrytis cinerea in Grapevine ( Vitis vinifera L.) Article · 29 Jul 2025
- Plant Biostimulants to Enhance Abiotic Stress Resilience in Crops Article · 28 Jan 2025
- Toward understanding grapevine responses to climate change: a multi-stress and holistic approach Article · 26 Nov 2024
- NAC61 regulates late- and post-ripening osmotic, oxidative, and biotic stress responses in grapevine Article · 30 Dec 2023
- The serine–glycine–one-carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development Article · 6 Oct 2023
- MYB24 orchestrates terpene and flavonol metabolism as light responses to anthocyanin depletion in variegated grape berries Article · 30 Aug 2023
- NAC61 regulates late-and post-ripening associated processes in grapes involving a NAC60-dependent regulatory network Preprint · 18 May 2023
- The complete reference genome for grapevine ( Vitis vinifera L.) genetics and breeding Article · 4 Apr 2023
- Accumulation of azafrin in the root apoplast of the medicinal plant Escobedia grandiflora might play a role in parasitism Article · 27 Feb 2023
- The transcription factor VviNAC60 regulates senescence- and ripening-related processes in grapevine Article · 30 Jan 2023
- Transcriptomic and metabolomic integration as a resource in grapevine to study fruit metabolite quality traits Article · 20 Oct 2022
- Metabolite analysis reveals distinct spatio-temporal accumulation of anthocyanins in two teinturier variants of cv. ‘Gamay’ grapevines (Vitis vinifera L.) Article · 31 Mar 2021
- Identification of ABA-Mediated Genetic and Metabolic Responses to Soil Flooding in Tomato (Solanum lycopersicum L. Mill) Article · 5 Mar 2021
- Salinity impairs photosynthetic capacity and enhances carotenoid-related gene expression and biosynthesis in tomato ( Solanum lycopersicum L. cv. Micro-Tom) Article · 17 Sep 2020
- Comprehending and improving cannabis specialized metabolism in the systems biology era Article · Sep 2020
- Synthetic conversion of leaf chloroplasts into carotenoid-rich plastids reveals mechanistic basis of natural chromoplast development Article · 19 Aug 2020
- The Role of UV-B light on Small RNA Activity During Grapevine Berry Development Article · 1 Mar 2019
- Status and Prospects of Systems Biology in Grapevine Research Book / chapter · 2019
- Combinatorial Regulation of Stilbene Synthase Genes by WRKY and MYB Transcription Factors in Grapevine (Vitis vinifera L.) Article · 26 Feb 2018
- The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides Article · 29 Jan 2018
- Transcriptome-Wide Identification of Novel UV-B- and Light Modulated Flavonol Pathway Genes Controlled by VviMYBF1 Article · 22 Jun 2017
- A group of grapevine MYBA transcription factors located in chromosome 14 control anthocyanin synthesis in vegetative organs with different specificities compared with the berry color locus Article · 17 May 2017
- Constructing Integrated Networks for Identifying New Secondary Metabolic Pathway Regulators in Grapevine: Recent Applications and Future Opportunities Article · 12 Apr 2017
- Transcriptomic and Metabolomic Networks in the Grape Berry Illustrate That it Takes More Than Flavonoids to Fight Against Ultraviolet Radiation Article · 30 Aug 2016
- The photomorphogenic factors UV-B RECEPTOR 1, ELONGATED HYPOCOTYL 5, and HY5 HOMOLOGUE are part of the UV-B signalling pathway in grapevine and mediate flavonol accumulation in response to the environment Article · 19 Aug 2016
- A systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation Article · 12 Jul 2016
- Genome-wide analyses for dissecting gene regulatory networks in the shoot apical meristem Article · Mar 2016
- The Phenylpropanoid Pathway Is Controlled at Different Branches by a Set of R2R3-MYB C2 Repressors in Grapevine Article · 6 Feb 2015
- Inspection of the Grapevine BURP Superfamily Highlights an Expansion of RD22 Genes with Distinctive Expression Features in Berry Development and ABA-Mediated Stress Responses Article · 16 Oct 2014
- Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development Other · 1 Jan 2014
- Identification of Arabidopsis Knockout Lines for Genes of Interest Book / chapter · 2 Dec 2013
- The grapevine guard cell-related VvMYB60 transcription factor is involved in the regulation of stomatal activity and is differentially expressed in response to ABA and osmotic stress Article · 21 Oct 2011
- Effect of pollination and fertilization on the expression of genes related to floral transition, hormone synthesis and berry development in grapevine Article · Sep 2011
- Arabidopsis paves the way: genomic and network analyses in crops Article · Apr 2011
- Isolation of WDR and bHLH genes related to flavonoid synthesis in grapevine (Vitis vinifera L.) Article · 29 Jan 2010
- GENE EXPRESSION CHARACTERIZATION OF NOVEL GRAPE WD-LIKE TRANSCRIPTION FACTORS VVWDL-1 AND VVWDL-2 Article · May 2009
- Post-veraison sunlight exposure induces MYB-mediated transcriptional regulation of anthocyanin and flavonol synthesis in berry skins of Vitis vinifera Article · 6 Jan 2009
- Phytoplasma and virus detection in commercial plantings of Vitis vinifera cv. Merlot exhibiting premature berry dehydration Article · 15 Dec 2008
- Reply to Storey et al. : More DNA and dating studies needed for ancient El Arenal-1 chickens Article · 2 Dec 2008
- Genetic and histological studies on the delayed systemic movement of Tobacco Mosaic Virus in Arabidopsis thaliana Article · 26 Sep 2008
- Indo-European and Asian origins for Chilean and Pacific chickens revealed by mtDNA Article · 29 Jul 2008
- Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomes Article · 22 Jul 2008
- Synthetic seed production from somatic embryos of Pinus radiata Article · 18 Jun 2008
- The N-homologue LRR domain adopts a folding which explains the TMV-Cg-induced HR-like response in sensitive tobacco plants Article · Jan 2008
- VIRUS INCIDENCE IN RASPBERRIES, BLACKBERRIES AND RED CURRANT COMMERCIAL PLANTINGS OF CENTRAL AND SOUTH CHILE Article · Jan 2008
- Isolation of the three grape sub-lineages of B-class MADS-box TM6, PISTILLATA and APETALA3 genes which are differentially expressed during flower and fruit development Article · Dec 2007
- Identification and characterization of a novel tobacco mosaic virus resistance N gene homologue in Nicotiana tabacum plants Article · 5 Mar 2004