Julio Isidro y Sanchez
Genomic assisted breeding · CBGP
Biography
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At The Rocinante Lab, we integrate cutting-edge technologies, including molecular genomics, phenomics, physiology, pathology, statistics, and breeding, to develop innovative strategies for creating superior crop varieties. Our research emphasizes genomic prediction and selection, association mapping, and the characterization of allelic diversity. Expanding our global perspective, leverage advanced machine learning and artificial intelligence methodologies to enhance the accuracy and efficiency of our breeding programs. By focusing on optimizing the selection and mating of individuals, we aim to accelerate genetic gains and improve trait performance across diverse environments. Our work encompasses a variety of crops, including small grains, sunflower, and berries, reflecting our commitment to addressing global food security challenges through interdisciplinary and data-driven approaches. |
Profile
| Institution | CBGP |
| Position | Técnico de Análisis Bioinformático |
| Home page | https://therocinante-lab.github.io/#software |
| Contact email | j.isidro@upm.es |
| ORCID | 0000-0002-9044-3221 |
Research
Research topics
Research lines
Projects, networks, transfer & teaching
Funded projects 21
- Genomic Assisted breeding for SUStainable agriculture: A benchmark approach
- New Drought- and Heat-Tolerant Blueberry Varieties through Advanced Genomic Selection
- Combining Genomic Approaches to Study Host–Pathogen Relationships in Wheat and Septoria CNS2024-154812
- Breed-E-Omics: Genomic Approach for Sustainable Spelt Agriculture
View all (17 more)
- Next generation variety testing for improved cropping on European farmland
- HealthyOats: Innovation in Oat Product Development
- WheatSustain: Knowledge-driven Genomic Predictions for Sustainable Disease Resistance
- Effect of Soil Water Content on Seedling Emergence in Small-grain Cereals
- Developing Multi-use Barley to Improve the Organic Irish Market
- CONSUS: Crop Optimization through Sensing, Understanding & Visualization
- Oats for the Future: Host Resistance and RNAi to Minimize Mycotoxin Contamination
- CTAG: Canadian Triticum Applied Genomics
- Machine Learning Approaches Applied to Genomic-Assisted Breeding
- Genomic-Assisted Breeding Applied to Sunflower Improvement
- WheatRes: Identification of New Sources of Horizontal Resistance to Septoria and Rust
- Breeding Tools to Harness Yield Productivity by Applying Genomic Selection
- Oat PanGenome Consortium
- Svevo Platinum Genome Consortium
- TRENDING_Wheat: Improving Accuracy and Efficiency of Selection for Complex Traits
- Optimal Genomic Mating (OGM): Framework for Improved Mate Allocation
- Soluciones digitales y biotecnológicas para mitigar la crisis del cambio climático y acelerar el proceso de mejora genética en olivicultura
Publications 33 entries
- Phenotypic and genetic resistance to Septoria blotch disease in European wheat varieties Article · 30 Mar 2026
- MateR: a novel genomic mating framework Software · 19 Jan 2026
- Expanding the gain-variance Pareto via optimal recycling and genomic mating Preprint · 29 Sep 2025
- GEmetrics: Best Linear Unbiased Prediction of Genotype-by-Environment Metrics Software · 5 Apr 2024
- Assessing the Genotype-by-Environment G×E Interaction in Desi Chickpea via the Bayesian Additive Main Effects and Multiplicative Interaction Model Article · 29 Jan 2024
View all (28 more)
- A comparison of methods for training population optimization in genomic selection Article · Mar 2023
- An Expectation-Maximization Algorithm for Combining a Sample of Partially Overlapping Covariance Matrices Article · 4 Feb 2023
- Alternative scoring methods of fusarium head blight resistance for genomic assisted breeding Article · 11 Jan 2023
- Assessment of genomic prediction reliability and optimization of experimental designs in multi-environment trials Article · 22 Nov 2021
- Training Set Optimization for Sparse Phenotyping in Genomic Selection: A Conceptual Overview Article · 9 Sep 2021
- Genomic prediction and training set optimization in a structured Mediterranean oat population Article · 3 Aug 2021
- TrainSel: An R Package for Selection of Training Populations Software · 7 May 2021
- Genotype by Environment Interaction Analysis of Agronomic Spring Barley Traits in Iceland Using AMMI, Factorial Regression Model and Linear Mixed Model Article · 7 Mar 2021
- Combining Partially Overlapping Multi-Omics Data in Databases Using Relationship Matrices Article · 14 Jul 2020
- Genome‐wide association mapping of Fusarium langsethiae infection and mycotoxin accumulation in oat ( Avena sativa L.) Article · 8 Jun 2020
- Genomic Approaches for Climate Resilience Breeding in Oats Book / chapter · 2020
- Design of training populations for selective phenotyping in genomic prediction Article · 5 Feb 2019
- Mark E. Sorrells Other · 21 Dec 2018
- Multi-objective optimized genomic breeding strategies for sustainable food improvement Article · 27 Sep 2018
- High-density genetic mapping of a major QTL for resistance to multiple races of loose smut in a tetraploid wheat cross Article · 27 Feb 2018
- Locally epistatic models for genome-wide prediction and association by importance sampling Article · 17 Oct 2017
- Effects of Seeding Rate on Durum Crop Production and Physiological Responses Article · Sep 2017
- Genome-Wide Association Analysis Using R Book / chapter · 2017
- Chromatographic Methods to Evaluate Nutritional Quality in Oat Book / chapter · 2017
- Efficient Breeding by Genomic Mating Article · 29 Nov 2016
- Optimization of genomic selection training populations with a genetic algorithm Article · 6 May 2015
- Training set optimization under population structure in genomic selection Article · 1 Nov 2014
- Quantitative genetic analysis and mapping of leaf angle in durum wheat Article · 7 Aug 2012
- Brassinosteroid leaf unrolling QTL mapping in durum wheat Article · 18 Feb 2012
- Changes in duration of developmental phases of durum wheat caused by breeding in Spain and Italy during the 20th century and its impact on yield Article · 28 Mar 2011
- Breeding Effects on Grain Filling, Biomass Partitioning, and Remobilization in Mediterranean Durum Wheat Article · Mar 2008
- Old and modern durum wheat varieties from Italy and Spain differ in main spike components Article · Feb 2008
- Genetic changes in durum wheat yield components and associated traits in Italian and Spanish varieties during the 20th century Article · 21 Dec 2006
