Raúl Cabrera Rubio
Bioinformatics, Computational Biology and Data Science · IATA
Biography
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PhD bioinformatician at the Spanish National Research Council (CSIC), at the Instituto de Agroquímica y Tecnología de Alimentos (IATA-CSIC). Molecular biology background: PCR, cloning, RNA isolation, DNA sequencing, gel electrophoresis, molecular genetics and cell culture. |
Profile
| Institution | IATA |
| Position | CSIC Tenured Scientist |
| Home page | https://www.researchgate.net/profile/Raul-Cabrera-Rubio |
| Contact email | rcabrerarubio@iata.csic.es |
| ORCID | 0000-0003-3652-9558 |
BCB Hub
| BCB Committee | Not a member |
| BCB Tools | |
| BCB Services |
Research
Research topics
Data AnalysisGenomicsGenome SequencingMicrobial communitiesMetagenomics
Research lines
None
Publications 75 entries
- De la Microbiota a la Salud: Influencia de la Dieta, Métodos de Análisis y Retos Regulatorios Article · 21 Dec 2025
- Cannabidiol modulates brain molecular alterations, gut microbiota dysbiosis and alcohol self-administration in a mouse model of fetal alcohol spectrum disorder Article · Dec 2025
- Factors influencing preterm infant microbiota and their role in wheezing development Article · 15 Nov 2025
- Maternal diet shapes infant microbiota and defensive capacity against infections in early life via differential human milk composition Article · Aug 2025
- Human milk oligosaccharide metabolism and antibiotic resistance in early gut colonizers: insights from bifidobacteria and lactobacilli in the maternal-infant microbiome Article · 9 May 2025
View all (70 more)
- Modulation of the gut microbiota and the microbial-produced gut metabolites by diclofenac exposure and selenium supplementation Article · 18 Mar 2025
- Comprehensive Targeted and Quantitative Profiling of the Human Milk Metabolome: Impact of Delivery Mode, Breastfeeding Practices, and Maternal Diet Article · Dec 2024
- Unravelling the evolutionary dynamics of antibiotic resistance genes in the infant gut microbiota during the first four months of life Article · 13 Aug 2024
- Infection of mice by the enteroaggregative E. coli strain 042 and two mutant derivatives overexpressing virulence factors: impact on disease markers, gut microbiota and concentration of SCFAs in feces Article · 23 Jul 2024
- Gut and respiratory tract microbiota in children younger than 12 months hospitalized for bronchiolitis compared with healthy children: can we predict the severity and medium-term respiratory outcome? Article · 2 Jul 2024
- Birthmode and environment-dependent microbiota transmission dynamics are complemented by breastfeeding during the first year Article · Jun 2024
- The gut microbiota in persistent post-operative pain following breast cancer surgery Article · 30 May 2024
- The role of Bifidobacterium genus in modulating the neonate microbiota: implications for antibiotic resistance acquisition in early life Article · 26 May 2024
- Effects of removing in-feed antibiotics and zinc oxide on the taxonomy and functionality of the microbiota in post weaning pigs Article · 16 Apr 2024
- Fine-tuning of post-weaning pig microbiome structure and functionality by in-feed zinc oxide and antibiotics use Article · 7 Feb 2024
- The Maternal Diet Index and Offspring Microbiota at 1 Month of Life: Insights from the Mediterranean Birth Cohort MAMI Article · 20 Jan 2024
- The Influence of Pre- and Postnatal Exposure to Air Pollution and Green Spaces on Infant's Gut Microbiota: Results from the Mami Birth Cohort Study Preprint · 2024
- Shaping Microbiota During the First 1000 Days of Life Book / chapter · 2024
- Human milk metals and metalloids shape infant microbiota Article · 2024
- Effect of beta-glucan supplementation on cystic fibrosis colonic microbiota: an in vitro study Article · 13 Dec 2023
- Metagenomic comparison of the faecal and environmental resistome on Irish commercial pig farms with and without zinc oxide and antimicrobial usage Article · 11 Dec 2023
- Human milk miRNAs associate to maternal dietary nutrients, milk microbiota, infant gut microbiota and growth Article · Dec 2023
- Diversity of the Microbiota of Traditional Izmir Tulum and Izmir Brined Tulum Cheeses and Selection of Potential Probiotics Article · 19 Sep 2023
- Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population Article · May 2023
- Maternal-infant antibiotic resistance genes transference: what do we know? Article · 5 Apr 2023
- Dietary-Induced Bacterial Metabolites Reduce Inflammation and Inflammation-Associated Cancer via Vitamin D Pathway Article · 18 Jan 2023
- Assessment of short-read shotgun sequencing and microbiome analysis of faecal samples to discriminate between equol producers and non-producers Article · 2023
- Identification of Streptococcus infantarius subsp. infantarius as the species primarily responsible for acid production in Izmir Brined Tulum Cheese from the Aegean Region of Türkiye Article · Oct 2022
- Using Shotgun Sequencing to Describe the Changes Induced by In-Feed Zinc Oxide and Apramycin in the Microbiomes of Pigs One Week Postweaning Article · 31 Aug 2022
- Lactobacillus salivarius UCC118™ Dampens Inflammation and Promotes Microbiota Recovery to Provide Therapeutic Benefit in a DSS-Induced Colitis Model Article · 9 Jul 2022
- Human milk microbiota: what did we learn in the last 20 years? Article · 2022
- Differential nasopharyngeal microbiota composition in children according to respiratory health status Article · 1 Nov 2021
- Rapid Increase of Oral Bacteria in Nasopharyngeal Microbiota After Antibiotic Treatment in Children With Invasive Pneumococcal Disease Article · 12 Oct 2021
- A Multiomic Approach to Investigate the Effects of a Weight Loss Program on the Intestinal Health of Overweight Horses Article · 18 Jun 2021
- Depletion of the gut microbiota differentially affects the impact of whey protein on high‐fat diet‐induced obesity and intestinal permeability Article · 31 May 2021
- Drainage class and soil phosphorus availability shape microbial communities in Irish grasslands Article · May 2021
- Porcine reproductive and respiratory syndrome virus impacts on gut microbiome in a strain virulence‐dependent fashion Article · 3 Mar 2021
- Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants Article · 22 Dec 2020
- Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms Article · 19 Nov 2020
- Outbreak of acute larval cyathostominosis – A “perfect storm” of inflammation and dysbiosis Article · 6 Oct 2020
- Age‐ and duration‐dependent effects of whey protein on high‐fat diet‐induced changes in body weight, lipid metabolism, and gut microbiota in mice Article · Aug 2020
- Sex-dependent associations between addiction-related behaviors and the microbiome in outbred rats Article · May 2020
- Genome-Wide Profiling of Enterotoxigenic Staphylococcus aureus Strains Used for the Production of Naturally Contaminated Cheeses Article · 27 Dec 2019
- Diversity and composition of the gut microbiota of Atlantic salmon ( Salmo salar ) farmed in Irish waters Article · 1 Sep 2019
- Cholestasis induced by bile duct ligation promotes changes in the intestinal microbiome in mice Article · 23 Aug 2019
- Removal of adult cyathostomins alters faecal microbiota and promotes an inflammatory phenotype in horses Article · May 2019
- Dietary α -lactalbumin alters energy balance, gut microbiota composition and intestinal nutrient transporter expression in high-fat diet-fed mice Article · 5 Mar 2019
- Association of Maternal Secretor Status and Human Milk Oligosaccharides With Milk Microbiota Article · Feb 2019
- Short-term consumption of a high-fat diet increases host susceptibility to Listeria monocytogenes infection Article · 18 Jan 2019
- 541: The vaginal microbiota differs between women who deliver preterm relative to those who deliver fullterm Article · Jan 2019
- A Diverse Range of Human Gut Bacteria Have the Potential To Metabolize the Dietary Component Gallic Acid Article · Oct 2018
- The Human Mesenteric Lymph Node Microbiome Differentiates Between Crohn’s Disease and Ulcerative Colitis Article · 15 Sep 2018
- Oral Delivery of Nisin in Resistant Starch Based Matrices Alters the Gut Microbiota in Mice Article · 15 Jun 2018
- Loss of MicroRNA-21 Influences the Gut Microbiota, Causing Reduced Susceptibility in a Murine Model of Colitis Article · 28 Mar 2018
- Timing of food intake impacts daily rhythms of human salivary microbiota: a randomized, crossover study Article · 5 Jan 2018
- Sex, Drugs, and the Microbiome: Goal/Sign-Tracking Phenotype Reveals Associations Between Behavior and Microbiome in a Sex-Dependent Manner in the Rat Article · 2018
- The Fungal Frontier: A Comparative Analysis of Methods Used in the Study of the Human Gut Mycobiome Article · 31 Jul 2017
- Whey protein effects on energy balance link the intestinal mechanisms of energy absorption with adiposity and hypothalamic neuropeptide gene expression Article · 1 Jul 2017
- Effect of probiotics in prevention of atopic dermatitis is dependent on the intrinsic microbiota at early infancy Article · Apr 2017
- Drunk bugs: Chronic vapour alcohol exposure induces marked changes in the gut microbiome in mice Article · Apr 2017
- Maternal Factors Related to Variability in the Human Milk Microbiome Book / chapter · 2017
- Impact of mode of delivery on the milk microbiota composition of healthy women Article · 19 Aug 2015
- Microbial mucosal colonic shifts associated with the development of colorectal cancer reveal the presence of different bacterial and archaeal biomarkers Article · 9 May 2014
- Relationship of children’s salivary microbiota with their caries status: a pyrosequencing study Article · 15 Feb 2014
- Gut Bacterial Diversity of the House Sparrow ( Passer domesticus ) Inferred by 16S rRNA Sequence Analysis Article · 2014
- Microbial Geography of the Oral Cavity Article · 14 May 2013
- Reply to Z Weizman Article · Mar 2013
- Microbiological Survey of the Human Gastric Ecosystem Using Culturing and Pyrosequencing Methods Article · 10 Feb 2013
- A Tissue-Dependent Hypothesis of Dental Caries Article · 2013
- Microbiome Diversity in the Bronchial Tracts of Patients with Chronic Obstructive Pulmonary Disease Article · Nov 2012
- The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery Article · Sep 2012
- Identifying a healthy oral microbiome through metagenomics Article · Jul 2012
- Mining Virulence Genes Using Metagenomics Article · 19 Oct 2011
- The oral metagenome in health and disease Article · 30 Jun 2011
- Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing Article · 15 Apr 2010