ARAMIS (Accurate long-Reads Assembly correction Method for Indel errorS)
ARAMIS is an Accurate long-Reads Assembly correction Method for Indel errorS (ARAMIS), the first NGS long-reads indels correction pipeline that combines several correction software in just one step using accurate short reads.
Basic Information
| Repository | https://github.com/genomics-ngsCBMSO/ARAMIS.git |
| Documentation | https://github.com/genomics-ngsCBMSO/ARAMIS |
| Main publication (DOI) | 10.1093/bib/bbab170 view |
| Contact email | sabio@cbm.csic.es |
| Authors/Maintainers | Sandra González de la Fuente, Ramón Peiró Pastor |
| Type of application | Desktop application, R/python package |
| Programming languages | PythonRPerl |
| Keywords | Omics, Genomics, Genome Sequencing, Genome Assembly, Long-read sequencing |
Technical details
| Input file formats | bam, fasta |
| Output file formats | fasta |
| Software compatibility | Linux |
| Hardware requirements | 5-10GB RAM |
| Type of containerization | None |
| Wrapper type | |
| Compatible tools | samtools, picard, pacbio-utils, bwa, igvtools, pilon |
| Funding resource | No funding |
| Funding support | No funding |
Statistics
| Unique users (last 12 months) | |
| Unique users (since first release) | |
| Software downloads (last 12 months) | |
| Software downloads (since first release) | |
| Jobs submitted (last 12 months) | |
| Jobs submitted (since first release) | |
| Repository clones (last 12 months) | |
| Repository clones (since first release) | |
| Citations (last 12 months) | <100 (~4 as of 15/10/2026) |
| Citations (since first release) | <100 (18 as of 15/10/2026) |
| Early-stage researcher effort (development) | |
| Early-stage researcher effort (maintenance) | |
| Technician-supported effort (development) | 2-3 |
| Technician-supported effort (maintenance) | 2-3 |
| Other effort (development) | |
| Other effort (maintenance) | |
| Total effort (development) | |
| Total effort (maintenance) |