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Research Group

Detalle de: PathoGenOmics

Title PathoGenOmics
Description

We study microbial pathogens of relevance in global public health in the context of their host and disease integrating omics data from an evolutionary perspective. Our main goal is to understand the basis of virulence in a given host, for a better understanding of the virulence of the pathogen. Our research addresses the two most deadliest pathogens worldwide: Mycobacterium tuberculosis and SARS-CoV-2.

Home Page https://www.i2sysbio.es/groups/23/
Contact Email mireia.coscolla@uv.es
Collaborating Companies
Spin Off
Patents
Hpc Resources
Institution I2SYSBIO
Ontology Omics, Computational Methods, Resources, Transcriptomics, RNA Sequencing (RNA-seq), Data Analysis, Bioinformatics Software and Tools, Annotation tools, Analysis packages (R, Python, etc.), Bioinformatics enabling techniques, Genomics, Genome Sequencing, Genome Assembly, Bioinformatics Infrastructure, Biological Databases, Computational models and simulations, Metabolic modelling, Computational Techniques, High-performance Computing, Genomic Annotation, Variant calling, Containers Computing, Statistical Methods for Biology, Molecular evolution, Bioinformatics education, Population genomics, Workflow managers, Sequence analysis, Sequence Alignment, Phylogenetic Analysis, Mapping, Metabolomics, Evolutionary rates, Quantitative genetics
Tools SNPick, get_MNV, VIPERA, tcfinder, Pathotypr
Service Units
Research Lines Integrated analysis of (re)emerging infections
Funded Projects Conexión CSIC en Biología Computacional y Bioinformática (BCBHub), Integrating clinical and waste-water sequencing for deciphering the next evolutionary steps of SARS-CoV-2 (EvolCovid), Molecular mechanisms involved in the pathogenic differences in favourable and non-favourable combinations of M. tuberculosis and the host (mol-TB-host), Search for pathogenicity biomarkers in Legionella spp with predictive interest for infection risk, Expanding the One Health approach to combat antimicrobial resistance
Selected Publications
View all (6 more)
Researchers Miguel Álvarez Herrera, Mireia Coscolla Devis, Paula Ruiz Rodríguez

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