Rosa Fernandez García
Biography
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Filogenómica Animal Su trabajo se centra en el estudio del árbol de la vida animal mediante herramientas genómicas y filogenómicas, con especial interés en el origen y la evolución de la biodiversidad animal terrestre a partir de ancestros marinos. |
Profile
| Institution | IBE |
| Position | Group Leader |
| Home page | https://www.metazomics.com/about-us |
| Contact email | rosa.fernandez@ibe.upf-csic.es |
| ORCID | 0000-0002-4719-6640 |
BCB Hub
| BCB Committee | Not a member |
| BCB Tools | |
| BCB Services |
Research
Research topics
TranscriptomicsGenome AssemblyPhylogenomicsComparative Genomics
Research lines
None
Projects, networks, transfer & teaching
Funded projects 4
- Land animal evolution: genomic landmarks on the path to terrestrial life
- EVOLUCION DE ARTROPODOS TERRESTRES: HITOS GENOMICOS EN EL CAMINO HACIA LA VIDA EN TIERRA
- Exploring terra incognita: terrestrialization of arthropods in the era of genomics
- The giant under our feet: genome sequencing of the Catalan endemic earthworm Norana najaformis
Publications 88 entries
- FANTASIA suite: a reproducible and configurable framework for embedding-based functional annotation of proteins Article · 27 Jun 2026
- Rethinking molecular evolution through protein language model embeddings Article · Jun 2026
- LINGUINE: a phylogeny-aware, orthogroup-based framework for robust ancestral linkage group inference Preprint · 26 May 2026
- Lungfish comparative genomics reveals ancient gene networks co-opted for life on land Preprint · 20 Mar 2026
- ERGA-BGE reference genome of Leviellus thorelli, a common orb-weaving spider representing the Zygiellidae family Article · 10 Feb 2026
View all (83 more)
- ERGA-BGE reference genome of Holothuria (Platyperona) sanctori: a sea cucumber from the Mediterranean Sea Article · 3 Feb 2026
- Parallel Genomic Remodelling Associated With Independent Terrestrialization Events in Arthropods Article · 31 Dec 2025
- Breaking bad: when clitellate genomes go rogue Article · Nov 2025
- An evaluation of clustering and assembly strategies from Iso-Seq data in the absence of reference genomes in non-model animals Preprint · 20 Sep 2025
- No Mate, No Problem: Molecular Mechanisms Involved in Parthenogenesis in the Cosmopolitan Earthworm Aporrectodea trapezoides (Annelida, Clitellata) Article · Jul 2025
- A chromosome-level genome of the King penguin ( Aptenodytes patagonicus ): an emerging model-in-the-wild for studying evolution Preprint · 15 Mar 2025
- ERGA-BGE genome of Noah’s Ark shell ( Arca noae Linnaeus, 1758), a Mediterranean bivalve species Preprint · 17 Feb 2025
- ERGA-BGE genome of Coenonympha oedippus : an IUCN endangered European butterfly species occurring in two ecotypes Preprint · 12 Feb 2025
- ERGA-BGE Reference Genome of Loboptera subterranea : a cave adapted cockroach endemic to the Canary Islands Preprint · 8 Feb 2025
- ERGA-BGE genome of Cheirolophus tagananensis: an IUCN endangered shrub endemic to the Canary Islands Preprint · 26 Jan 2025
- ERGA-BGE genome of Pinctada radiata (Leach, 1814): one of the first Lessepsian migrants Preprint · 17 Jan 2025
- ERGA-BGE genome of Stigmatoteuthis arcturi Robson, 1948: the jewelled squid Preprint · 15 Jan 2025
- A proteo-transcriptomic investigation of toxin evolution in planarians and their role in flatworm terrestrialization Preprint · 14 Jan 2025
- Disentangling the evolutionary history of terrestrial planarians through phylogenomics Preprint · 8 Jan 2025
- ERGA-BGE Reference Genome of the Striped Field Mouse ( Apodemus agrarius ), a Widespread and Abundant Species in Central and Eastern Europe Preprint · 7 Dec 2024
- ERGA-BGE Reference Genome of the Northern chamois ( Rupicapra rupicapra ): Europe’s most abundant mountain ungulate Preprint · 21 Nov 2024
- MATEdb2, a Collection of High-Quality Metazoan Proteomes across the Animal Tree of Life to Speed Up Phylogenomic Studies Article · 1 Nov 2024
- Contextualising samples: supporting reference genomes of European biodiversity through sample and associated metadata collection Article · 17 Sep 2024
- ERGA-BGE genome of Valencia hispanica (Valenciennes, 1826): a critically endangered Iberian toothcarp Preprint · 31 Jul 2024
- A punctuated burst of massive genomic rearrangements by chromosome shattering and the origin of non-marine annelids Preprint · 21 May 2024
- The genome sequence of the Montseny horsehair worm, Gordionus montsenyensis sp. nov., a key resource to investigate Ecdysozoa evolution Article · 12 Mar 2024
- Decoding functional proteome information in model organisms using protein language models Preprint · 15 Feb 2024
- Reference genome of the ant Lasius platythorax Preprint · 19 Jul 2023
- Parallel and convergent genomic changes underlie independent subterranean colonization across beetles Article · 29 Jun 2023
- Parallel duplication and loss of aquaporin‐coding genes during the “out of the sea” transition as potential key drivers of animal terrestrialization Article · 31 Jan 2023
- Highly dynamic evolution of the chemosensory system driven by gene gain and loss across subterranean beetles Preprint · 12 Dec 2022
- MATEdb, a data repository of high-quality metazoan transcriptome assemblies to accelerate phylogenomic studies Article · 5 Oct 2022
- The era of reference genomes in conservation genomics Article · Mar 2022
- Smelling in the dark: Phylogenomic insights into the chemosensory system of a subterranean beetle Article · 2 May 2021
- Local adaptation fuels cryptic speciation in terrestrial annelids Article · May 2020
- Gene gain and loss across the metazoan tree of life Article · 28 Jan 2020
- Differential gene expression during substrate probing in larvae of the Caribbean coral Porites astreoides Article · 29 Oct 2019
- Global distribution of earthworm diversity Article · 25 Oct 2019
- Genome-informed integrative taxonomic description of three cryptic species in the earthworm genus Carpetania (Oligochaeta, Hormogastridae) Preprint · 13 Oct 2019
- Evolutionary emergence of Hairless as a novel component of the Notch signaling pathway Article · 23 Sep 2019
- Revisiting metazoan phylogeny with genomic sampling of all phyla Article · 10 Jul 2019
- Selection following gene duplication shapes recent genome evolution in the pea aphid Acyrthosiphon pisum Preprint · 21 May 2019
- Delegating Sex: Differential Gene Expression in Stolonizing Syllids Uncovers the Hormonal Control of Reproduction Article · 11 Dec 2018
- Insights into the diversity of Hormogastridae (Annelida, Oligochaeta) with descriptions of six new species Article · 4 Oct 2018
- A phylotranscriptomic backbone of the orb-weaving spider family Araneidae (Arachnida, Araneae) supported by multiple methodological approaches Article · Sep 2018
- Phylogenomics, Diversification Dynamics, and Comparative Transcriptomics across the Spider Tree of Life Article · May 2018
- Phylogenomics illuminates the backbone of the Myriapoda Tree of Life and reconciles morphological and molecular phylogenies Article · 8 Jan 2018
- Pinpointing cryptic borders: Fine-scale phylogeography and genetic landscape analysis of the Hormogaster elisae complex (Oligochaeta, Hormogastridae) Article · Jul 2017
- Insights into the origin of parthenogenesis in oligochaetes: Strong genetic structure in a cosmopolitan earthworm is not related to reproductive mode Article · Jul 2017
- The Opiliones tree of life: shedding light on harvestmen relationships through transcriptomics Article · 22 Feb 2017
- Cryptic characters for cryptic taxa: On the taxonomic utility of the genital chaetae in earthworms (Oligochaeta, Hormogastridae) Article · Sep 2016
- Macroecological inferences on soil fauna through comparative niche modeling: The case of Hormogastridae (Annelida, Oligochaeta) Article · Jul 2016
- Exploring Phylogenetic Relationships within Myriapoda and the Effects of Matrix Composition and Occupancy on Phylogenomic Reconstruction Article · 9 May 2016
- A molecular phylogeny of the temperate Gondwanan family Pettalidae (Arachnida, Opiliones, Cyphophthalmi) and the limits of taxonomic sampling Article · 18 Apr 2016
- Evaluating evolutionary pressures and phylogenetic signal in earthworms: a case study - the number of typhlosole lamellae in Hormogastridae (Annelida, Oligochaeta) Article · 21 Mar 2016
- Phylogenomic analyses of a Mediterranean earthworm family (Annelida: Hormogastridae) Article · Jan 2016
- Diversification patterns in cosmopolitan earthworms: similar mode but different tempo Article · Jan 2016
- Exploring phylogenomic relationships within Myriapoda: should high matrix occupancy be the goal? Preprint · 9 Nov 2015
- Unnoticed in the tropics: phylogenomic resolution of the poorly known arachnid order Ricinulei (Arachnida) Article · Jun 2015
- Phylogenomic resolution of scorpions reveals multilevel discordance with morphological phylogenetic signal Article · 7 Apr 2015
- Predicting soil micro-variables and the distribution of an endogeic earthworm species through a model based on large-scale variables Article · Feb 2015
- Linking genetic diversity and morphological disparity: biodiversity assessment of a highly unexplored family of harvestmen (Arachnida : Opiliones : Neopilionidae) in New Zealand Article · 19 Dec 2014
- A molecular phylogenetic approach to the New Zealand species of Enantiobuninae (Opiliones : Eupnoi : Neopilionidae) Article · 19 Dec 2014
- Unearthing the historical biogeography of Mediterranean earthworms (Annelida: Hormogastridae) Article · 27 Nov 2014
- On four poorly known harvestmen from New Zealand (Arachnida: Opiliones: Cyphophthalmi: Eupnoi: Dyspnoi: Laniatores) Article · 29 Sep 2014
- Phylogeography and species delimitation in the New Zealand endemic, genetically hypervariable harvestman species, Aoraki denticulata (Arachnida, Opiliones, Cyphophthalmi) Article · 12 Sep 2014
- Phylogenomic Analysis of Spiders Reveals Nonmonophyly of Orb Weavers Article · Aug 2014
- Comparative phylogeography and population genetic structure of three widespread mollusc species in the Mediterranean and near Atlantic Article · 25 Jul 2014
- New light into the hormogastrid riddle: morphological and molecular description of Hormogaster joseantonioi sp. n. (Annelida, Clitellata, Hormogastridae) Article · 5 Jun 2014
- Sine Systemate Chaos? A Versatile Tool for Earthworm Taxonomy: Non-Destructive Imaging of Freshly Fixed and Museum Specimens Using Micro-Computed Tomography Article · 16 May 2014
- A dataset comprising four micro-computed tomography scans of freshly fixed and museum earthworm specimens Article · 16 May 2014
- Does the invasion of the exotic tree Ailanthus altissima affect the soil arthropod community? The case of a riparian forest of the Henares River (Madrid) Article · May 2014
- A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data Article · 9 Apr 2014
- Evaluating Topological Conflict in Centipede Phylogeny Using Transcriptomic Data Sets Article · 26 Mar 2014
- Earthworms, good indicators for palaeogeographical studies? Testing the genetic structure and demographic history in the peregrine earthworm Aporrectodea trapezoides (Dugès, 1828) in southern Europe Article · Mar 2013
- Does the order of copulation matter? Experimental paternity analyses in the earthworm Hormogaster elisae (Annelida: Hormogastridae) Article · Mar 2013
- Compilation of morphological and molecular data, a necessity for taxonomy: The case of Hormogaster abbatissae sp. n. (Annelida, Clitellata, Hormogastridae) Article · 15 Nov 2012
- Adding complexity to the complex: New insights into the phylogeny, diversification and origin of parthenogenesis in the Aporrectodea caliginosa species complex (Oligochaeta, Lumbricidae) Article · Aug 2012
- Appearances can be deceptive: different diversification patterns within a group of Mediterranean earthworms (Oligochaeta, Hormogastridae) Article · 17 Jul 2012
- Understanding the biogeography of a group of earthworms in the Mediterranean basin—The phylogenetic puzzle of Hormogastridae (Clitellata: Oligochaeta) Article · Oct 2011
- Ultrastructural and molecular insights into three populations of Aporrectodea trapezoides (Dugés, 1828) (Oligochaeta, Lumbricidae) with different reproductive modes Article · Oct 2011
- A vagrant clone in a peregrine species: Phylogeography, high clonal diversity and geographical distribution in the earthworm Aporrectodea trapezoides (Dugès, 1828) Article · Oct 2011
- Relationships among spatial distribution of soil microarthropods, earthworm species and soil properties Article · Oct 2010
- Mate choice of an endogeic earthworm revealed by microsatellite markers Article · Oct 2010
- Life cycle and reproductive traits of the earthworm Aporrectodea trapezoides (Dugès, 1828) in laboratory cultures Article · Aug 2010
- Cryptic speciation of hormogastrid earthworms revealed by mitochondrial and nuclear data Article · Jul 2010
- The influence of Hormogaster elisae (Oligochaeta, Hormogastridae) on the colonisation of defaunated soil by microarthropods in laboratory cultures Article · Mar 2009
- Geostatistical and multivariate analysis of the horizontal distribution of an earthworm community in El Molar (Madrid, Spain) Article · Apr 2007